| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-09-07 23:55 -0400 (Sat, 07 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4448 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4481 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-09-07 16:02:47 -0400 (Sat, 07 Sep 2024) |
| EndedAt: 2024-09-07 16:07:04 -0400 (Sat, 07 Sep 2024) |
| EllapsedTime: 256.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-09-07 16:03:31.089][biodb::testContext]
biodb.INFO [2024-09-07 16:03:31.093][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:31.094][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-09-07 16:03:31.096][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:03:31.097][biodb::testContext]
biodb.INFO [2024-09-07 16:03:31.105][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:31.108][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:31.140][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:31.142][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:03:31.144][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.149][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:03:31.179][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.184][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:03:31.185][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.189][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:03:31.190][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:03:31.192][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:03:31.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.196][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:03:31.197][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:03:31.199][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.203][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:03:31.204][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:03:31.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.209][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:03:31.210][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:03:31.211][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:03:31.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.216][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:03:31.217][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.222][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:03:31.223][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:03:31.224][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:03:31.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.229][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:31.230][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:03:31.231][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:03:31.232][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:03:31.233][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:03:31.235][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:03:31.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.239][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:03:31.240][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:03:31.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.245][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:03:31.246][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:03:31.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.250][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:03:31.252][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:03:31.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.256][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:03:31.257][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:03:31.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.262][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:03:31.263][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:03:31.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.267][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:03:31.269][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:03:31.272][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:03:31.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.277][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:03:31.278][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:03:31.279][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:03:31.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.286][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:03:31.313][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.326][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:03:31.328][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.329][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:31.330][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.331][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.332][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.334][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.335][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:31.336][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:31.337][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.338][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:03:31.340][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:31.341][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.342][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.343][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:31.343][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:31.343][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:31.343][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:31.343][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:31.345][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:31.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.348][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:31.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.357][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.358][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.359][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:31.360][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:31.362][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.363][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.364][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:03:31.366][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.367][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:31.368][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.370][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:31.371][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.372][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.373][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.374][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.375][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:31.377][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:31.378][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.379][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:03:31.380][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:31.381][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.383][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.384][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:31.384][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:31.384][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:31.384][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:03:31.384][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:03:31.385][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:31.386][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.387][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.388][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:31.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.392][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.393][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.394][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:31.395][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:31.396][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.397][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.399][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:03:31.401][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.402][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:03:31.403][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:31.406][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.407][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.408][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.409][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.410][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:03:31.411][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:31.413][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.414][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:03:31.415][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:31.416][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.417][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.419][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.420][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:31.421][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.422][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.423][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:31.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.426][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.428][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.429][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:31.430][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:31.431][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.432][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.434][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:03:31.436][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.437][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:03:31.438][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.439][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:31.440][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.441][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.443][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.444][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.445][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:03:31.446][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:31.447][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.449][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:03:31.450][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:31.451][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.452][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.453][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.455][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:03:31.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.458][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:31.459][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.460][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.461][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.462][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.464][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:31.465][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:31.466][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.467][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:03:31.471][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:31.472][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.572][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:03:31.576][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:03:31.578][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:03:31.579][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:03:31.581][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:03:31.582][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:03:31.584][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:31.586][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:31.587][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:03:31.589][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:03:31.590][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:03:31.592][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:03:31.593][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:03:31.595][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:03:31.596][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:03:31.598][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:03:31.599][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:03:31.601][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:03:31.603][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:03:31.604][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:03:31.606][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:03:31.607][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:03:31.609][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:03:31.610][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:03:31.612][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:03:31.614][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:03:31.615][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:03:31.617][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:03:31.618][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:03:31.620][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:03:31.621][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:03:31.623][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:03:31.624][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:03:31.626][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:03:31.627][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:03:31.629][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:03:31.631][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:03:31.632][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:03:31.634][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:03:31.635][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:03:31.637][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:03:31.638][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:03:31.640][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:03:31.641][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:03:31.643][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:03:31.645][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:03:31.646][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:03:31.648][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:03:31.649][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:03:31.651][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:03:31.652][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:03:31.654][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:03:31.655][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:03:31.657][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:03:31.659][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:03:31.660][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:03:31.662][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:03:31.663][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:03:31.665][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:03:31.666][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:03:31.668][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:03:31.669][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:03:31.671][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:03:31.672][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:03:31.674][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:03:31.676][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:03:31.677][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:03:31.679][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:03:31.680][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:03:31.682][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:03:31.683][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:03:31.685][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:03:31.686][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:03:31.688][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:03:31.689][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:03:31.691][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:03:31.692][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:03:31.694][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:03:31.696][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:03:31.697][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:03:31.699][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:03:31.700][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:03:31.702][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:03:31.743][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:03:31.746][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-09-07 16:03:31.749][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:03:31.750][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.752][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:03:31.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.895][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-09-07 16:03:31.904][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-09-07 16:03:31.906][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.908][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.909][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.910][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:03:31.911][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.912][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.914][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.915][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-09-07 16:03:31.916][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-09-07 16:03:31.917][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:03:31.918][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.920][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-09-07 16:03:31.921][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-09-07 16:03:31.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-09-07 16:03:31.924][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:03:31.925][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:03:31.925][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:03:31.925][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:03:31.926][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-09-07 16:03:31.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.929][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:03:31.931][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:03:31.932][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:03:31.933][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:03:31.934][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:31.934][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-09-07 16:03:31.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:03:31.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:03:31.937][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:03:31.939][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-09-07 16:03:31.939][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-09-07 16:03:31.944][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:03:31.946][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:03:31.948][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-09-07 16:03:31.949][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:03:31.951][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:03:31.953][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:03:31.975][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-09-07 16:03:31.976][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-09-07 16:03:31.980][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-09-07 16:03:31.984][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-09-07 16:03:31.987][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:03:31.989][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-09-07 16:03:31.990][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-09-07 16:03:31.992][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-09-07 16:03:32.002][biodb::testThat]
biodb.INFO [2024-09-07 16:03:32.003][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:03:32.004][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:32.005][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:32.018][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-09-07 16:03:32.020][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:32.023][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:32.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:32.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:32.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:32.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:32.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:32.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:32.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:32.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.113][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.114][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.117][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.185][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:32.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.208][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:32.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:32.348][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-09-07 16:03:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:32.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.630][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:32.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.700][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.771][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.806][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.845][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.976][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:32.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:32.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.987][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:32.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:32.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:32.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:32.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.042][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.059][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.069][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.072][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.100][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-09-07 16:03:33.135][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:33.137][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:33.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:33.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:33.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:33.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:33.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:33.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:33.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:33.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.178][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.182][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.203][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.213][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.223][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.229][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:33.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.233][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.250][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:33.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:33.335][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-09-07 16:03:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.393][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.629][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.661][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:33.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.699][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.731][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.765][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.805][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:33.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:33.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.916][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:33.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:33.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.981][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:33.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:33.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:33.991][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:33.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:33.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:33.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.053][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.077][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.084][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-09-07 16:03:34.086][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:34.088][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:34.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:34.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.115][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.139][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.171][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:34.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.184][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.201][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:34.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.215][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:34.270][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-09-07 16:03:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:34.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.307][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:34.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:34.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:34.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:34.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.419][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.533][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.598][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.602][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.667][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.706][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.740][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.774][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:34.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:34.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.804][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:34.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:34.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:34.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:34.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:34.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:34.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.875][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:34.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.884][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.890][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:34.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.894][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:34.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:34.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:34.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:34.904][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:34.916][biodb::testThat]
biodb.INFO [2024-09-07 16:03:34.917][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:03:34.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:34.920][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:34.922][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-09-07 16:03:34.929][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:03:34.935][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-09-07 16:03:34.937][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:03:34.960][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-09-07 16:03:34.961][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:34.963][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:34.964][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:34.965][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:34.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:34.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:34.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:34.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:34.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:34.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:34.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:34.985][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-09-07 16:03:35.003][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:35.004][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:35.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-09-07 16:03:35.864][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-09-07 16:03:36.311][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:36.315][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-09-07 16:03:36.329][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2024-09-07 16:03:36.333][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2024-09-07 16:03:36.336][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:36.337][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:03:36.339][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:36.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.357][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.374][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.375][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.378][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.384][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.398][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.426][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.429][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.439][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.456][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.460][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.467][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.470][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:36.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.549][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.553][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.560][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.584][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.600][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.614][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.624][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.631][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.635][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.647][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.650][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:36.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:36.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:36.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:36.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:36.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:36.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:36.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:36.706][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.716][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.727][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.757][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.758][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.767][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.786][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.793][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.807][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:36.921][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-09-07 16:03:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:03:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:03:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:03:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:36.991][biodb::testThat]
biodb.INFO [2024-09-07 16:03:36.992][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:03:36.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:36.994][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:36.998][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:36.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.001][ef$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:37.003][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-09-07 16:03:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:37.055][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-09-07 16:03:37.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-09-07 16:03:37.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-09-07 16:03:37.096][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.111][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-09-07 16:03:37.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:37.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.121][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:03:37.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:03:37.136][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-09-07 16:03:37.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:37.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:37.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.159][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.163][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:37.169][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.170][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:03:37.172][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:37.173][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:37.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:37.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:37.274][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:37.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:03:37.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:37.280][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-09-07 16:03:37.310][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.311][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:03:37.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:37.313][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:37.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:37.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:03:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:03:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:03:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:37.447][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.448][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:03:37.449][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:37.450][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.462][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.463][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:03:37.464][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:37.466][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.478][biodb::testThat]
biodb.INFO [2024-09-07 16:03:37.479][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:37.481][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:37.482][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:37.486][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-09-07 16:03:37.981][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-09-07 16:03:38.820][biodb::testThat]
biodb.INFO [2024-09-07 16:03:38.822][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:03:38.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:38.824][biodb::testThat]
biodb.DEBUG[2024-09-07 16:03:39.221][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-09-07 16:03:39.645][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:39.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.654][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:39.656][biodb::testThat]
biodb.INFO [2024-09-07 16:03:39.657][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-09-07 16:03:39.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:39.660][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:39.792][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:39.796][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:39.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:03:39.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:39.802][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:03:39.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:39.877][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:39.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:03:39.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:39.883][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-09-07 16:03:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:39.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:39.960][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:39.961][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:03:39.963][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:39.976][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:03:39.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:39.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:39.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:39.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:39.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:39.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:39.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:39.994][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-09-07 16:03:40.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:40.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-09-07 16:03:40.045][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:40.046][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:40.048][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:40.049][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:40.050][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:40.052][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:40.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:40.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:40.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:40.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:40.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:40.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:40.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:40.080][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-09-07 16:03:40.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:40.098][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:40.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-09-07 16:03:40.471][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-09-07 16:03:40.835][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:40.838][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-09-07 16:03:40.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-09-07 16:03:40.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-09-07 16:03:40.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:40.851][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:40.853][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:40.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:40.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:40.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:40.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:40.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:40.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:40.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:40.872][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.875][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.882][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:40.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:40.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.892][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.896][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.906][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.916][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:40.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:40.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.928][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:40.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.948][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:40.976][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:40.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:40.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:40.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:40.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:40.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:40.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:41.065][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-09-07 16:03:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:41.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:41.099][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:41.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:03:41.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:41.115][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:03:41.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:41.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:41.173][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-09-07 16:03:41.175][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:41.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-09-07 16:03:41.179][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:41.180][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:41.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:41.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:41.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:41.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:41.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:41.203][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-09-07 16:03:41.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:41.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:41.209][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-09-07 16:03:41.568][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-09-07 16:03:41.928][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:41.931][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-09-07 16:03:41.943][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-09-07 16:03:41.947][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-09-07 16:03:41.949][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:41.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:41.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:41.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:41.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:41.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:41.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:41.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:41.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:41.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:41.969][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.980][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:41.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.990][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.021][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:42.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:42.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.026][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:42.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.046][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.069][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:42.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:42.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.080][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:42.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:42.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:42.141][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-09-07 16:03:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:42.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:03:42.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:42.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:03:42.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:42.199][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:03:42.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:42.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:42.246][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-09-07 16:03:42.247][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:42.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-09-07 16:03:42.250][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:42.252][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:42.253][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:42.255][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:42.256][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:42.257][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:42.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:42.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:42.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:42.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:42.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:42.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:42.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:42.274][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-09-07 16:03:42.277][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:42.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:42.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-09-07 16:03:42.640][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-09-07 16:03:43.003][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:43.006][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-09-07 16:03:43.011][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-09-07 16:03:43.015][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-09-07 16:03:43.018][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:43.020][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:43.021][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:43.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.047][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.058][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:43.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:43.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:43.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:43.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.067][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:43.070][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:43.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.072][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.077][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:43.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:43.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.083][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:43.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.104][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:43.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:43.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:43.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:43.174][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-09-07 16:03:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:43.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:43.214][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-09-07 16:03:43.215][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:43.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-09-07 16:03:43.219][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:43.220][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:43.221][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:43.223][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:43.224][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:43.225][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:43.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:43.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-09-07 16:03:43.246][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:43.247][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:43.249][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-09-07 16:03:43.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-09-07 16:03:43.970][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:43.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-09-07 16:03:43.978][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-09-07 16:03:43.982][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-09-07 16:03:43.984][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:43.986][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:43.987][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:43.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:44.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.022][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:44.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:44.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:44.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.043][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:44.044][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:44.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.048][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:44.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.055][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:44.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.069][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:44.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:44.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:44.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:44.140][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-09-07 16:03:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:44.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:44.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:44.180][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-09-07 16:03:44.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:44.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-09-07 16:03:44.185][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:44.186][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:44.188][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:44.189][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:44.190][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:44.192][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:44.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:44.209][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-09-07 16:03:44.212][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:44.213][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:44.215][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-09-07 16:03:44.573][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-09-07 16:03:44.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:44.939][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-09-07 16:03:44.944][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-09-07 16:03:44.947][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-09-07 16:03:44.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:44.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:44.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:44.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:44.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:44.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:44.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:44.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:44.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:44.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:44.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:44.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:44.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.993][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:44.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:44.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:44.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.014][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:45.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:45.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.024][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:45.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:45.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:45.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:45.106][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-09-07 16:03:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:45.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:45.146][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-09-07 16:03:45.148][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:45.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-09-07 16:03:45.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:45.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:45.154][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:45.155][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:45.157][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:45.158][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:45.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:45.175][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-09-07 16:03:45.178][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:45.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:45.181][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-09-07 16:03:45.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-09-07 16:03:45.899][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:45.902][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-09-07 16:03:45.906][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-09-07 16:03:45.910][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-09-07 16:03:45.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:45.921][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:45.923][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:45.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:45.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:45.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:45.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:45.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:45.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:45.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:45.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.951][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:45.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:45.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.961][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.985][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.991][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:45.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:45.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.002][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:46.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.182][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:46.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:46.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:46.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:46.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.195][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:46.249][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-09-07 16:03:46.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:46.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:46.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:46.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:46.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:46.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:46.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:46.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:46.279][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-09-07 16:03:46.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:46.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-09-07 16:03:46.283][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:46.285][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:46.286][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:46.287][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:46.289][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:46.290][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:46.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:46.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:46.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:46.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:46.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:46.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:46.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:46.307][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-09-07 16:03:46.310][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:46.311][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:46.313][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-09-07 16:03:46.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-09-07 16:03:47.041][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:47.044][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-09-07 16:03:47.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-09-07 16:03:47.054][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-09-07 16:03:47.056][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:47.058][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:47.060][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:47.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:47.079][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.091][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:47.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:47.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:47.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.103][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:47.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:47.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.149][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:47.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.172][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:47.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.183][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:47.185][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:47.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:47.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:47.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:47.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:47.262][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-09-07 16:03:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:47.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:47.296][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-09-07 16:03:47.297][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:47.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-09-07 16:03:47.301][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:47.303][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:47.305][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:47.306][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:47.307][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:47.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:47.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:47.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:47.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:47.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:47.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:47.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:47.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:47.328][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-09-07 16:03:47.333][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:47.334][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:47.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-09-07 16:03:47.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-09-07 16:03:48.063][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:48.066][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-09-07 16:03:48.072][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-09-07 16:03:48.076][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-09-07 16:03:48.079][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:48.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:48.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:48.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:48.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:48.103][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.115][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:48.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.136][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.145][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:48.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:48.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.167][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:48.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.186][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.190][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.196][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:48.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:48.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:48.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:48.265][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-09-07 16:03:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:48.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:48.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.295][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-09-07 16:03:48.296][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:48.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-09-07 16:03:48.300][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:48.301][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:48.303][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:48.304][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:48.305][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:48.307][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:48.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:48.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:48.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:48.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:48.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:48.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:48.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:48.324][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-09-07 16:03:48.327][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:48.328][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:48.330][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-09-07 16:03:48.693][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-09-07 16:03:49.053][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:49.056][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-09-07 16:03:49.061][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-09-07 16:03:49.066][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-09-07 16:03:49.069][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:49.071][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:49.072][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:49.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:49.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:49.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:49.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:49.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:49.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:49.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:49.090][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.094][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.100][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:49.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.110][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:49.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:49.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:49.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:49.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.124][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:49.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:49.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.134][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:49.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:49.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.144][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.146][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:49.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:49.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:49.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.166][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:49.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:49.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:49.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:49.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:49.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.190][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:49.245][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-09-07 16:03:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:49.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:49.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:49.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:49.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:49.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:49.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:49.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:49.275][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-09-07 16:03:49.277][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:49.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-09-07 16:03:49.280][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:49.282][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:49.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:49.284][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:49.292][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:49.293][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:49.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:49.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:49.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:49.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:49.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:49.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:49.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:49.309][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-09-07 16:03:49.312][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:49.313][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:49.315][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-09-07 16:03:49.676][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-09-07 16:03:50.038][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:50.041][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-09-07 16:03:50.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-09-07 16:03:50.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-09-07 16:03:50.052][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:50.053][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:50.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:50.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:50.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:50.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:50.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:50.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:50.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:50.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:50.072][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.075][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.082][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:50.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:50.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.092][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:50.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:50.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:50.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:50.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.105][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:50.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:50.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.122][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:50.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:50.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.125][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.127][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:50.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:50.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.147][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:50.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:50.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:50.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:50.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:50.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:50.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:50.226][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-09-07 16:03:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:50.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:50.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:50.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:50.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:50.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:50.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:50.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:50.257][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-09-07 16:03:50.258][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:50.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-09-07 16:03:50.262][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:50.263][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:50.264][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:50.266][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:50.267][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:50.268][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:50.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:50.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:50.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:50.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:50.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:50.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:50.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:50.285][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-09-07 16:03:50.289][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:50.290][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:50.291][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-09-07 16:03:50.667][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-09-07 16:03:51.028][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:51.030][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-09-07 16:03:51.035][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-09-07 16:03:51.039][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-09-07 16:03:51.041][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:51.043][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:51.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:51.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:51.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:51.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:51.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:51.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:51.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:51.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:51.061][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.072][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:51.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:51.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.075][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.082][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:51.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:51.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:51.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:51.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:51.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:51.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:51.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:51.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.117][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:51.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:51.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:51.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.131][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.138][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:51.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:51.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:51.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.148][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:51.149][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:51.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:51.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:51.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:51.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:51.225][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-09-07 16:03:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:51.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:51.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:51.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:51.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:51.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:51.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:51.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:51.255][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-09-07 16:03:51.256][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:51.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-09-07 16:03:51.259][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:51.261][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:51.262][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:51.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:51.265][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:51.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:51.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:51.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:51.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:51.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:51.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:51.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:51.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:51.283][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-09-07 16:03:51.286][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:51.287][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:51.289][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-09-07 16:03:51.649][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-09-07 16:03:52.010][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:52.013][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-09-07 16:03:52.018][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-09-07 16:03:52.022][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-09-07 16:03:52.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:52.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:52.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:52.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:52.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:52.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:52.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:52.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:52.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:52.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:52.046][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:52.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:52.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:52.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:52.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.081][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:52.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.091][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:52.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:52.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.101][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.103][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:52.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:52.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:52.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.123][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:52.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:52.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:52.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:52.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:52.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:52.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:52.202][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-09-07 16:03:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:52.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:52.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:52.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:52.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:52.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:52.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:52.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:52.232][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-09-07 16:03:52.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:52.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-09-07 16:03:52.237][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:52.239][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:52.240][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:52.241][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:52.242][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:52.244][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:52.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:52.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:52.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:52.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:52.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:52.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:52.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:52.261][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-09-07 16:03:52.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:52.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:52.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-09-07 16:03:52.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-09-07 16:03:52.995][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:52.998][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-09-07 16:03:53.003][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-09-07 16:03:53.007][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-09-07 16:03:53.009][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:53.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:53.012][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:53.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:53.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:53.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:53.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:53.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:53.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:53.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:53.030][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.040][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:53.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:53.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.044][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:53.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:53.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:53.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:53.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:53.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:53.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:53.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.076][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:53.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:53.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:53.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:53.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.114][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:53.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:53.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:53.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:53.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.128][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:53.178][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-09-07 16:03:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:53.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:53.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:53.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:53.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:53.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:53.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:53.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:53.208][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-09-07 16:03:53.209][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:53.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-09-07 16:03:53.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:53.214][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:53.215][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:53.217][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:53.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:53.219][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:53.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:53.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:53.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:53.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:53.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:53.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:53.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:53.237][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-09-07 16:03:53.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:53.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:53.243][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-09-07 16:03:53.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-09-07 16:03:53.979][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:53.982][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-09-07 16:03:53.986][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-09-07 16:03:53.990][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-09-07 16:03:53.993][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:53.994][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:53.996][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:53.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:53.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:54.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.022][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:54.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:54.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:54.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:54.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:54.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:54.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:54.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:54.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:54.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:54.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.057][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:54.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.061][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:54.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:54.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.078][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:54.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:54.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.081][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.088][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:54.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:54.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.098][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:54.099][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:54.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:54.152][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-09-07 16:03:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:54.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:54.182][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-09-07 16:03:54.183][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:54.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-09-07 16:03:54.187][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:54.188][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:54.190][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:54.191][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:54.192][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:54.193][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:54.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:54.211][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-09-07 16:03:54.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:54.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:54.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-09-07 16:03:54.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-09-07 16:03:54.981][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:54.984][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-09-07 16:03:54.990][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-09-07 16:03:54.995][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-09-07 16:03:54.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:54.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:55.001][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:55.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:55.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:55.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:55.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:55.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:55.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:55.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:55.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.029][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:55.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.047][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:55.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:55.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:55.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:55.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:55.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.070][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:55.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:55.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.080][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.082][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:55.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.086][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:55.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:55.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.102][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:55.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:55.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.105][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:55.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:55.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:55.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.125][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:55.181][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-09-07 16:03:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:55.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:55.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:55.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:55.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:55.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:55.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:55.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:55.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:55.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:55.212][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-09-07 16:03:55.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:55.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-09-07 16:03:55.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:55.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:55.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:55.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:55.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:55.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:55.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:55.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:55.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:55.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:55.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:55.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:55.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:55.240][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-09-07 16:03:55.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:55.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:55.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-09-07 16:03:55.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-09-07 16:03:55.968][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:55.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-09-07 16:03:55.976][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-09-07 16:03:55.980][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-09-07 16:03:55.982][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:55.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:55.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:55.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:55.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:55.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:55.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:55.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:55.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:56.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:56.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:56.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:56.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.023][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:56.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:56.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:56.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:56.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:56.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:56.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:56.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:56.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.059][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:56.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:56.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:56.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:56.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:56.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.090][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:56.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:56.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:56.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:56.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:56.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:56.160][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-09-07 16:03:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:56.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:56.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:56.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:56.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:56.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:56.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:56.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:56.190][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-09-07 16:03:56.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:56.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-09-07 16:03:56.195][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:56.197][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:56.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:56.199][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:56.201][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:56.202][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:56.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:56.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:56.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:56.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:56.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:56.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:56.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:56.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-09-07 16:03:56.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:56.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:56.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-09-07 16:03:56.591][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-09-07 16:03:56.949][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:56.951][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-09-07 16:03:56.956][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-09-07 16:03:56.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-09-07 16:03:56.963][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:56.964][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:56.966][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:56.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:56.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:56.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:56.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:56.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:56.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:56.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:56.983][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:56.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.993][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:56.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:56.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.003][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:57.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:57.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:57.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:57.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:57.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:57.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:57.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.038][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:57.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.042][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.043][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:57.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:57.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.069][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:57.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:57.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:57.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:57.144][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-09-07 16:03:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:57.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:57.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:57.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:57.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:57.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:57.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:57.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:57.174][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-09-07 16:03:57.176][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:57.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-09-07 16:03:57.179][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:57.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:57.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:57.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:57.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:57.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:57.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:57.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:57.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:57.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:57.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:57.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:57.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:57.203][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-09-07 16:03:57.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:57.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:57.209][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-09-07 16:03:57.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-09-07 16:03:57.931][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:57.934][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-09-07 16:03:57.938][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-09-07 16:03:57.942][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-09-07 16:03:57.945][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:57.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:57.948][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:57.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:57.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:57.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:57.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:57.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:57.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:57.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:57.965][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.975][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:57.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:57.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.979][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:57.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:57.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:57.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:57.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.989][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:57.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:57.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:57.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:57.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:58.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.009][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:58.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:58.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.019][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.021][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:58.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:58.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:58.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.041][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:58.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:58.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:58.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.051][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:58.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:58.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:58.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:58.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:58.128][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-09-07 16:03:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:58.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:58.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:58.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:58.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:58.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:58.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:58.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:58.158][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-09-07 16:03:58.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:58.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-09-07 16:03:58.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:58.164][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:58.165][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:58.166][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:58.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:58.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:58.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:58.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:58.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:58.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:58.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:58.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:58.186][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-09-07 16:03:58.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:58.190][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:58.192][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-09-07 16:03:58.561][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-09-07 16:03:58.938][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:58.941][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-09-07 16:03:58.946][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-09-07 16:03:58.950][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-09-07 16:03:58.952][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:58.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:58.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:58.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:58.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:58.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:58.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:58.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:58.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:58.973][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:58.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:58.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:58.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:58.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:58.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:59.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:59.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:59.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:59.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:03:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:59.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:03:59.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.030][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:59.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:03:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:59.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:59.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:59.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:59.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:59.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:03:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:03:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:59.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:59.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:03:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:03:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:03:59.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:59.130][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-09-07 16:03:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:59.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:59.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:59.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:59.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:59.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:59.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:59.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:59.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:59.160][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-09-07 16:03:59.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:03:59.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-09-07 16:03:59.165][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:03:59.167][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:03:59.168][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:03:59.169][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:03:59.170][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:03:59.172][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:03:59.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:59.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:59.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:59.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:59.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:59.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:59.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:59.189][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-09-07 16:03:59.192][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:59.193][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:59.195][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-09-07 16:03:59.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-09-07 16:03:59.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:59.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-09-07 16:03:59.929][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-09-07 16:03:59.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-09-07 16:03:59.936][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:03:59.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:03:59.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:03:59.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:59.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:59.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:59.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:59.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:59.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:59.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:59.957][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:03:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:03:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.967][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:59.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:59.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:03:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:03:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:59.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:59.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:03:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:03:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:59.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:59.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:03:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:03:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:59.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:03:59.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:00.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:00.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.019][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:00.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:00.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:00.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:00.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:00.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.052][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:00.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:00.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:00.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:00.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:00.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:00.121][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-09-07 16:04:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:00.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:00.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:00.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:00.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:00.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:00.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:00.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:00.153][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-09-07 16:04:00.155][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:00.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-09-07 16:04:00.158][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:00.160][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:00.161][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:00.163][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:00.164][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:00.165][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:00.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:00.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:00.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:00.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:00.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:00.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:00.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:00.183][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-09-07 16:04:00.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:00.187][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:00.189][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-09-07 16:04:00.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-09-07 16:04:00.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:00.923][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-09-07 16:04:00.928][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-09-07 16:04:00.932][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-09-07 16:04:00.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:00.936][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:00.937][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:00.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:00.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:00.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:00.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:00.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:00.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:00.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:00.954][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.964][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:00.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:00.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:00.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.974][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:00.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:00.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.978][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:00.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:00.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:00.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:00.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:00.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:00.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:00.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:00.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:00.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:01.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:01.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.010][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:01.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:01.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.030][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:01.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:01.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:01.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:01.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:01.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:01.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.053][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.108][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-09-07 16:04:01.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:01.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:01.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:04:01.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:01.160][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:04:01.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:01.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:01.854][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:01.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-09-07 16:04:01.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:01.868][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-09-07 16:04:01.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:01.876][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:01.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-09-07 16:04:01.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:01.893][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-09-07 16:04:01.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:01.910][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-09-07 16:04:01.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:01.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-09-07 16:04:01.915][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:01.928][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-09-07 16:04:01.930][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:01.931][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:01.933][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:01.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:01.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:01.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:01.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:01.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:01.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:01.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:01.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.960][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:01.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:01.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:01.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:01.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:01.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:01.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:01.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.011][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:02.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:02.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.031][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:02.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:02.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:02.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:02.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:02.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.051][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:02.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:02.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:02.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:02.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.110][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-09-07 16:04:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:02.174][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-09-07 16:04:02.176][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:02.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-09-07 16:04:02.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:02.192][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-09-07 16:04:02.194][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:02.195][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:02.197][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:02.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.224][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:02.225][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:02.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.234][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:02.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:02.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:02.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:02.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:02.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:02.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:02.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.258][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.268][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.269][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:02.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.283][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.290][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:02.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.294][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:02.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:02.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.304][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:02.312][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:02.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.369][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-09-07 16:04:02.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:02.429][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:02.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:04:02.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:02.438][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:04:02.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:02.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:02.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:02.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:02.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:02.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:02.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:02.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:03.098][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:03.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-09-07 16:04:03.101][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:03.104][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-09-07 16:04:03.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:03.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:04:03.781][biodb::testThat]
biodb.INFO [2024-09-07 16:04:03.783][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-09-07 16:04:03.784][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:04:03.785][biodb::testThat]
biodb.TRACE[2024-09-07 16:04:03.789][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:03.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:03.885][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:03.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:04:03.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:03.891][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:04:03.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:03.927][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:03.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:04:03.930][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:03.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:04:03.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:03.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:03.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:03.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:03.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:03.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:03.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:03.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:03.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:04.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:04.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:04.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:04.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.021][private$selectFields]
biodb.TRACE[2024-09-07 16:04:04.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:04.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:04.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.043][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.049][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-09-07 16:04:04.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:04.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:04.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:04.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:04.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:04.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:04.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.100][private$selectFields]
biodb.TRACE[2024-09-07 16:04:04.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:04.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:04.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.113][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.115][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.121][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:04.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:04.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:04.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:04.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:04.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:04.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:04.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.165][private$selectFields]
biodb.TRACE[2024-09-07 16:04:04.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:04.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:04.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:04.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.187][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:04.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:04.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-09-07 16:04:04.204][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:04.205][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:04.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:04.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:04.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:04.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:04.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:04.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:04.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:04.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:04.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:04.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:04.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:04.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:04.969][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:04.972][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-09-07 16:04:04.978][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-09-07 16:04:04.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:04.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:04.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:04.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:04.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:04.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:04.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:04.996][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-09-07 16:04:04.997][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:04.999][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-09-07 16:04:05.001][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:05.002][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:05.003][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:05.005][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:05.006][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:05.007][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:05.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:05.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-09-07 16:04:05.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:05.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:05.030][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-09-07 16:04:05.389][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-09-07 16:04:05.756][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:05.758][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-09-07 16:04:05.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-09-07 16:04:05.767][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-09-07 16:04:05.770][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:05.771][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:05.773][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:05.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:05.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.800][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:05.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:05.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:05.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:05.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:05.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:05.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.834][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:05.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:05.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.844][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.846][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:05.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.850][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:05.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.860][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:05.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.866][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:05.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:05.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:05.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.876][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:05.878][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:05.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:05.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:05.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:05.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:05.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:05.958][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-09-07 16:04:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:05.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:05.988][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-09-07 16:04:05.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:05.991][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-09-07 16:04:05.993][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:05.994][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:05.995][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:05.997][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:05.998][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:05.999][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:06.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:06.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-09-07 16:04:06.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:06.020][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:06.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-09-07 16:04:06.390][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-09-07 16:04:06.752][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:06.755][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-09-07 16:04:06.760][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-09-07 16:04:06.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-09-07 16:04:06.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:06.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:06.769][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:06.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:06.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:06.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:06.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:06.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.807][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:06.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:06.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:06.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:06.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:06.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:06.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:06.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:06.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:06.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.842][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:06.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:06.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:06.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.863][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:06.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:06.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.873][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:06.874][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:06.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.883][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:06.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:06.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.887][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:06.942][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-09-07 16:04:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:06.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:06.962][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:06.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:06.966][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:07.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:07.707][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:07.710][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-09-07 16:04:07.715][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-09-07 16:04:07.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:07.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:07.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:07.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:07.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:07.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:07.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:07.733][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-09-07 16:04:07.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:07.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-09-07 16:04:07.738][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:07.739][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:07.740][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:07.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:07.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:07.744][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:07.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:07.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:07.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:07.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:07.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:07.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:07.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:07.761][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-09-07 16:04:07.764][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:07.765][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:07.767][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-09-07 16:04:08.127][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-09-07 16:04:08.570][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:08.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-09-07 16:04:08.578][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-09-07 16:04:08.582][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-09-07 16:04:08.585][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:08.587][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:08.588][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:08.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:08.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:08.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:08.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:08.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:08.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:08.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:08.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.616][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:08.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:08.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:08.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:08.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:08.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.630][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:08.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:08.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:08.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:08.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:08.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:08.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:08.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:08.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:08.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.675][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:08.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:08.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:08.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.689][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:08.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:08.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.699][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:08.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:08.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:08.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:08.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.719][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:08.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:08.774][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-09-07 16:04:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:08.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:08.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:08.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:08.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:08.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:08.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:08.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:08.805][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-09-07 16:04:08.806][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:08.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-09-07 16:04:08.810][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:08.811][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:08.812][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:08.814][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:08.815][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:08.816][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:08.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:08.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:08.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:08.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:08.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:08.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:08.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:08.835][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-09-07 16:04:08.838][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:08.839][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:08.841][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-09-07 16:04:09.206][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-09-07 16:04:09.567][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:09.569][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-09-07 16:04:09.574][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-09-07 16:04:09.579][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-09-07 16:04:09.582][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:09.583][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:09.585][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:09.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:09.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.613][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:09.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:09.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:09.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.623][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:09.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:09.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.627][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:09.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:09.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:09.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:09.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.647][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:09.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:09.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:09.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.664][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:09.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.667][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:09.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:09.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:09.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:09.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:09.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.694][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:09.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:09.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.698][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:09.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:09.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.708][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:09.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:09.763][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-09-07 16:04:09.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:09.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:09.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:09.794][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-09-07 16:04:09.795][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:09.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-09-07 16:04:09.799][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:09.800][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:09.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:09.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:09.804][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:09.805][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:09.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:09.830][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-09-07 16:04:09.833][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:09.834][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:09.836][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-09-07 16:04:10.205][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-09-07 16:04:10.565][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:10.568][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-09-07 16:04:10.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-09-07 16:04:10.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-09-07 16:04:10.579][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:10.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:10.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:10.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:10.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:10.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:10.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:10.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:10.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:10.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:10.600][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:10.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:10.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.620][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:10.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:10.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:10.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:10.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:10.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:10.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:10.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.644][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:10.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:10.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.655][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:10.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.660][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:10.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:10.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:10.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:10.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.676][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:10.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:10.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:10.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.690][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:10.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:10.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.700][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:10.756][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-09-07 16:04:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:10.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:10.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:10.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:10.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:10.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:10.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:10.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:10.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:10.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.837][private$selectFields]
biodb.TRACE[2024-09-07 16:04:10.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:10.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:10.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.853][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.859][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:04:10.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:10.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:10.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:10.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:10.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:10.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:10.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.902][private$selectFields]
biodb.TRACE[2024-09-07 16:04:10.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:10.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:10.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.910][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.923][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:04:10.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:10.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:10.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:10.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:10.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:10.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:10.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.973][private$selectFields]
biodb.TRACE[2024-09-07 16:04:10.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:10.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:10.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:10.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:10.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:10.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:11.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:04:11.011][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:11.012][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:11.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:11.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:11.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:11.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:11.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:11.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:11.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:11.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:11.034][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:11.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:11.037][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:11.396][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:11.769][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:11.772][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-09-07 16:04:11.777][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-09-07 16:04:11.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:11.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:11.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:11.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:11.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:11.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:11.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:11.795][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-09-07 16:04:11.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:11.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-09-07 16:04:11.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:11.802][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:11.803][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:11.804][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:11.806][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:11.807][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:11.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:11.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:11.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:11.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:11.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:11.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:11.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:11.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-09-07 16:04:11.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:11.829][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:11.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-09-07 16:04:12.192][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-09-07 16:04:12.551][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:12.554][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-09-07 16:04:12.559][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-09-07 16:04:12.562][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-09-07 16:04:12.565][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:12.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:12.568][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:12.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:12.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:12.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:12.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:12.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:12.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:12.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:12.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.596][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:12.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:12.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.606][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:12.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:12.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:12.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.620][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:12.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:12.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.630][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:12.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:12.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.642][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:12.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.645][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:12.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:12.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.662][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:12.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:12.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.666][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:12.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:12.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:12.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:12.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:12.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:12.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.686][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:12.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:12.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:12.742][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-09-07 16:04:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:12.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:12.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:12.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:12.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:12.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:12.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:12.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:12.772][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-09-07 16:04:12.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:12.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-09-07 16:04:12.777][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:12.778][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:12.780][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:12.781][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:12.782][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:12.783][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:12.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:12.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:12.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:12.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:12.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:12.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:12.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:12.801][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-09-07 16:04:12.804][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:12.805][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:12.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-09-07 16:04:13.170][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-09-07 16:04:13.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:13.536][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-09-07 16:04:13.541][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-09-07 16:04:13.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-09-07 16:04:13.548][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:13.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:13.551][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:13.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:13.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:13.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:13.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:13.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:13.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:13.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:13.577][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.581][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.587][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:13.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:13.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:13.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:13.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:13.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:13.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:13.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:13.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:13.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:13.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.632][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:13.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:13.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:13.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:13.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:13.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.662][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:13.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:13.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.666][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:13.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:13.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.676][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:13.731][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-09-07 16:04:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:13.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:13.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:13.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:13.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:13.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:13.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:13.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:13.761][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-09-07 16:04:13.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:13.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-09-07 16:04:13.766][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:13.767][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:13.769][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:13.770][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:13.771][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:13.772][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:13.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:13.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:13.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:13.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:13.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:13.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:13.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:13.789][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-09-07 16:04:13.792][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:13.794][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:13.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-09-07 16:04:14.156][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-09-07 16:04:14.522][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:14.525][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-09-07 16:04:14.530][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-09-07 16:04:14.536][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-09-07 16:04:14.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:14.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:14.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:14.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:14.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:14.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:14.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:14.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:14.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:14.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:14.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.564][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.570][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:14.572][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:14.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:14.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:14.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.584][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:14.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:14.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:14.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:14.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:14.602][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:14.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:14.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:14.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.617][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.619][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:14.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.622][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:14.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:14.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.632][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.639][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:14.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:14.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.649][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:14.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:14.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.653][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:14.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:14.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:14.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:14.719][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-09-07 16:04:14.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:14.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:14.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:14.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:14.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:14.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:14.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:14.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:14.763][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-09-07 16:04:14.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:14.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-09-07 16:04:14.768][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:14.769][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:14.771][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:14.772][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:14.773][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:14.774][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:14.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:14.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:14.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:14.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:14.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:14.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:14.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:14.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-09-07 16:04:14.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:14.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:14.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-09-07 16:04:15.160][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-09-07 16:04:15.523][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:15.526][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-09-07 16:04:15.532][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-09-07 16:04:15.536][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-09-07 16:04:15.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:15.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:15.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:15.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:15.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:15.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:15.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:15.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:15.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:15.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:15.572][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.578][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.588][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:15.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:15.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:15.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:15.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:15.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:15.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:15.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:15.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.624][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:15.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:15.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.636][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:15.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.639][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:15.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:15.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.656][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:15.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.660][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:15.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:15.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:15.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:15.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:15.736][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-09-07 16:04:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:15.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:15.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:15.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:15.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:15.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:15.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:15.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:15.767][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-09-07 16:04:15.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:15.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-09-07 16:04:15.772][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:15.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:15.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:15.776][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:15.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:15.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:15.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:15.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:15.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:15.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:15.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:15.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:15.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:15.797][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-09-07 16:04:15.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:15.801][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:15.803][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-09-07 16:04:16.163][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-09-07 16:04:16.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:16.540][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-09-07 16:04:16.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-09-07 16:04:16.549][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-09-07 16:04:16.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:16.553][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:16.555][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:16.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:16.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:16.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:16.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:16.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:16.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:16.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:16.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.583][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:16.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.593][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:16.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:16.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:16.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:16.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:16.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:16.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:16.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:16.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:16.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.628][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:16.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:16.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:16.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.647][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:16.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:16.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.657][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:16.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:16.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:16.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:16.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:16.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:16.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:16.734][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-09-07 16:04:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:16.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:16.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:16.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:16.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:16.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:16.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:16.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:16.763][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-09-07 16:04:16.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:16.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-09-07 16:04:16.768][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:16.769][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:16.771][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:16.772][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:16.773][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:16.774][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:16.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:16.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:16.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:16.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:16.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:16.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:16.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:16.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-09-07 16:04:16.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:16.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:16.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-09-07 16:04:17.160][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-09-07 16:04:17.521][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:17.524][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-09-07 16:04:17.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-09-07 16:04:17.534][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-09-07 16:04:17.537][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:17.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:17.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:17.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:17.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:17.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:17.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:17.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:17.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:17.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:17.559][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.574][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:17.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:17.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.589][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:17.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:17.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.593][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:17.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:17.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:17.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:17.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:17.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:17.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:17.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.625][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:17.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.628][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:17.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:17.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:17.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.638][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.645][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:17.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:17.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:17.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:17.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:17.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:17.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:17.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:17.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:17.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:17.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:17.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:17.724][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-09-07 16:04:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:17.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:17.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:17.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:17.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:17.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:17.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:17.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:17.754][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-09-07 16:04:17.755][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:17.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-09-07 16:04:17.759][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:17.760][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:17.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:17.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:17.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:17.765][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:17.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:17.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:17.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:17.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:17.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:17.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:17.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:17.782][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-09-07 16:04:17.786][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:17.787][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:17.788][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-09-07 16:04:18.149][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-09-07 16:04:18.511][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:18.514][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-09-07 16:04:18.519][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-09-07 16:04:18.523][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-09-07 16:04:18.525][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:18.527][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:18.528][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:18.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:18.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:18.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:18.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:18.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:18.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:18.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:18.553][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.563][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:18.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:18.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:18.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.582][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:18.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:18.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:18.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:18.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:18.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:18.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:18.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:18.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:18.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:18.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.617][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:18.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:18.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:18.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.637][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:18.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:18.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.647][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:18.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:18.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:18.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:18.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.660][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:18.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:18.715][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-09-07 16:04:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:18.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:18.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:18.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:18.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:18.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:18.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:18.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:18.745][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-09-07 16:04:18.746][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:18.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-09-07 16:04:18.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:18.751][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:18.753][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:18.754][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:18.755][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:18.756][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:18.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:18.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:18.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:18.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:18.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:18.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:18.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:18.774][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-09-07 16:04:18.777][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:18.778][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:18.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-09-07 16:04:19.141][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-09-07 16:04:19.508][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:19.511][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-09-07 16:04:19.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-09-07 16:04:19.519][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-09-07 16:04:19.522][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:19.523][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:19.525][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:19.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:19.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:19.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:19.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:19.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:19.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:19.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:19.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.553][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.562][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:19.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:19.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.572][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:19.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:19.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:19.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:19.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:19.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:19.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:19.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:19.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:19.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:19.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:19.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.608][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:19.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.614][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:19.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:19.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.624][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:19.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.630][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:19.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:19.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.641][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:19.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.644][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:19.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:19.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:19.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:19.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:19.710][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-09-07 16:04:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:19.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:19.730][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:19.731][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:19.733][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:20.099][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:20.458][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:20.469][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-09-07 16:04:20.475][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-09-07 16:04:20.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:20.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:20.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:20.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:20.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:20.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:20.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:20.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:20.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:20.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:20.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:20.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:20.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:20.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:20.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:20.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:20.522][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-09-07 16:04:20.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:20.525][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-09-07 16:04:20.526][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:20.528][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:20.529][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:20.530][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:20.532][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:20.534][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:20.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:20.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:20.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:20.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:20.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:20.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:20.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:20.553][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-09-07 16:04:20.556][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:20.558][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:20.559][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-09-07 16:04:20.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-09-07 16:04:21.296][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:21.299][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-09-07 16:04:21.305][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-09-07 16:04:21.310][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-09-07 16:04:21.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:21.314][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:21.316][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:21.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:21.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:21.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:21.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:21.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:21.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:21.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:21.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.337][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.344][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:21.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:21.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.347][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:21.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:21.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.354][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:21.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:21.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:21.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:21.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:21.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.378][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:21.385][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:21.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.389][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:21.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.393][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:21.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:21.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:21.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.409][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:21.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:21.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:21.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:21.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.429][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:21.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:21.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:21.488][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-09-07 16:04:21.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:21.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:21.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:21.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:21.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:21.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:21.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:21.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:21.518][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-09-07 16:04:21.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:21.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-09-07 16:04:21.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:21.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:21.526][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:21.527][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:21.528][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:21.529][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:21.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:21.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:21.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:21.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:21.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:21.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:21.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:21.550][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-09-07 16:04:21.553][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:21.554][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:21.556][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-09-07 16:04:21.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-09-07 16:04:22.278][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:22.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-09-07 16:04:22.285][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-09-07 16:04:22.289][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-09-07 16:04:22.291][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:22.293][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:22.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:22.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.321][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:22.323][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:22.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:22.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.335][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:22.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:22.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.345][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:22.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:22.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:22.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.355][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:22.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:22.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.365][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.367][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:22.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.390][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.396][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:22.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:22.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.400][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.407][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:22.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:22.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:22.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:22.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:22.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.501][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-09-07 16:04:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.517][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:22.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.546][private$selectFields]
biodb.TRACE[2024-09-07 16:04:22.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:22.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:22.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.555][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.559][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.568][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:04:22.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.610][private$selectFields]
biodb.TRACE[2024-09-07 16:04:22.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:22.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:22.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.626][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.632][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:04:22.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.674][private$selectFields]
biodb.TRACE[2024-09-07 16:04:22.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:22.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:22.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.690][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.694][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:04:22.713][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:22.714][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:22.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:22.854][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:22.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:04:22.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:22.860][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:04:22.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:22.867][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:22.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:04:22.870][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:22.882][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:04:22.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:22.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:22.972][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:22.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:22.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:22.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:22.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:22.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:22.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:22.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:22.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:22.998][private$selectFields]
biodb.TRACE[2024-09-07 16:04:22.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:23.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:23.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.020][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:04:23.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:23.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:23.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:23.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:23.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:23.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:23.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:23.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.090][private$selectFields]
biodb.TRACE[2024-09-07 16:04:23.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:23.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:23.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.119][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.120][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:23.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:23.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:23.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:23.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:23.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:23.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:23.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:23.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.162][private$selectFields]
biodb.TRACE[2024-09-07 16:04:23.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:23.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:23.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:23.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.182][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.183][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:04:23.201][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:23.202][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:23.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:23.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:23.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:23.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:23.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:23.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:23.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:23.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:23.231][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:23.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:23.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:23.595][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:23.958][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:23.961][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-09-07 16:04:23.966][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-09-07 16:04:23.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:23.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:23.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:23.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:23.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:23.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:23.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:23.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:23.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:23.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:24.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:24.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:24.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:24.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:24.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:24.012][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-09-07 16:04:24.013][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:24.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-09-07 16:04:24.017][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:24.018][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:24.019][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:24.021][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:24.022][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:24.023][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:24.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:24.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:24.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:24.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:24.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:24.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:24.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:24.040][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-09-07 16:04:24.043][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:24.044][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:24.046][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-09-07 16:04:24.420][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-09-07 16:04:24.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:24.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-09-07 16:04:24.787][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-09-07 16:04:24.791][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-09-07 16:04:24.794][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:24.795][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:24.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:24.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:24.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:24.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:24.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:24.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:24.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:24.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:24.815][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.825][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:24.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:24.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:24.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.835][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:24.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:24.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.839][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:24.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:24.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.849][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:24.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:24.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.871][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:24.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.875][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.885][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.891][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:24.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:24.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:24.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:24.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.905][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:24.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:24.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:24.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:24.972][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-09-07 16:04:24.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:24.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:24.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:24.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:24.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:24.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:25.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:25.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:25.002][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-09-07 16:04:25.003][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:25.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-09-07 16:04:25.007][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:25.009][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:25.010][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:25.011][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:25.012][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:25.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:25.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:25.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:25.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:25.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:25.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:25.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:25.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:25.031][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-09-07 16:04:25.034][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:25.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:25.037][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-09-07 16:04:25.415][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-09-07 16:04:25.774][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:25.777][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-09-07 16:04:25.782][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-09-07 16:04:25.785][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-09-07 16:04:25.788][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:25.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:25.791][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:25.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:25.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:25.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:25.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:25.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:25.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:25.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:25.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.818][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:25.820][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:25.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.822][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.828][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:25.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:25.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:25.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:25.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.843][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:25.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:25.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:25.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:25.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:25.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.872][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.874][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:25.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:25.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.887][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:25.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:25.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:25.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:25.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.908][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:25.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.918][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:25.973][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-09-07 16:04:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:25.990][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:25.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:25.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:25.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.017][private$selectFields]
biodb.TRACE[2024-09-07 16:04:26.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:26.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:26.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:04:26.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:26.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:26.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.081][private$selectFields]
biodb.TRACE[2024-09-07 16:04:26.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:26.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:26.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.097][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:26.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:04:26.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:26.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:26.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.147][private$selectFields]
biodb.TRACE[2024-09-07 16:04:26.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:26.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:26.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.162][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:26.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:26.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:26.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:04:26.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:26.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:26.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:26.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:26.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:26.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:26.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:26.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:26.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:26.578][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:26.941][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:26.944][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-09-07 16:04:26.949][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-09-07 16:04:26.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:26.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:26.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:26.968][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-09-07 16:04:26.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:26.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-09-07 16:04:26.973][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:26.975][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:26.976][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:26.977][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:26.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:26.980][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:26.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:26.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:26.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:26.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:26.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:26.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:26.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:26.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-09-07 16:04:27.000][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:27.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:27.003][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-09-07 16:04:27.366][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-09-07 16:04:27.729][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:27.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-09-07 16:04:27.746][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-09-07 16:04:27.751][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-09-07 16:04:27.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:27.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:27.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:27.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:27.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:27.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:27.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:27.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:27.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:27.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:27.774][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.784][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:27.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:27.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:27.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:27.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.798][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:27.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:27.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:27.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:27.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:27.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:27.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:27.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.835][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:27.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:27.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.840][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:27.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.855][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:27.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:27.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.865][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:27.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:27.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:27.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:27.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:27.937][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-09-07 16:04:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:27.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:27.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:27.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:27.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:27.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:27.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:27.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:27.967][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-09-07 16:04:27.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:27.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-09-07 16:04:27.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:27.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:27.975][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:27.976][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:27.977][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:27.978][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:27.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:27.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:27.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:27.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:27.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:27.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:27.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:27.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-09-07 16:04:27.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:28.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:28.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-09-07 16:04:28.361][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-09-07 16:04:28.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:28.738][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-09-07 16:04:28.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-09-07 16:04:28.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-09-07 16:04:28.750][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:28.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:28.753][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:28.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:28.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:28.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:28.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:28.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:28.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:28.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:28.770][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.781][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:28.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:28.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:28.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:28.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:28.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:28.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:28.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:28.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.822][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:28.823][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.827][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:28.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:28.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:28.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:28.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:28.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.861][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:28.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:28.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:28.935][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-09-07 16:04:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:28.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:28.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:28.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:28.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:28.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:28.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:28.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:28.965][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-09-07 16:04:28.966][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:28.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-09-07 16:04:28.970][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:28.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:28.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:28.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:28.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:28.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:28.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:28.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:28.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:28.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:28.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:28.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:28.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:28.993][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-09-07 16:04:28.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:28.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:28.999][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-09-07 16:04:29.363][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-09-07 16:04:29.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:29.739][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-09-07 16:04:29.744][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-09-07 16:04:29.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-09-07 16:04:29.750][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:29.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:29.753][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:29.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:29.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:29.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:29.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:29.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:29.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:29.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:29.770][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.780][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:29.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:29.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.790][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:29.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:29.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:29.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:29.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:29.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:29.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:29.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.826][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:29.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:29.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.829][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.839][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:29.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:29.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.849][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.856][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:29.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.860][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:29.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:29.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:29.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:29.925][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-09-07 16:04:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:29.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:29.941][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:29.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:29.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:29.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:29.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:29.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:29.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:29.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:29.968][private$selectFields]
biodb.TRACE[2024-09-07 16:04:29.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:29.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:29.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:29.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:29.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:29.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:04:30.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.031][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.047][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-09-07 16:04:30.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.103][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.111][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-09-07 16:04:30.141][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:30.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.163][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:04:30.173][biodb::testThat]
biodb.INFO [2024-09-07 16:04:30.174][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-09-07 16:04:30.176][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:04:30.177][biodb::testThat]
biodb.TRACE[2024-09-07 16:04:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:30.271][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:30.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:30.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:04:30.278][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:30.280][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:04:30.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:30.316][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:30.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:04:30.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:30.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:04:30.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.381][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:30.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.408][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.424][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.429][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-09-07 16:04:30.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.472][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.485][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.493][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:30.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.543][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.559][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.565][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-09-07 16:04:30.582][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:30.583][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:30.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:30.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:30.605][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:30.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:04:30.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:30.610][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:04:30.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:30.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:30.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:04:30.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:30.681][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:04:30.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:30.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:30.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.797][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:04:30.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.873][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.881][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.893][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:04:30.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.937][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.945][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:30.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.959][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:30.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:04:30.982][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:30.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:30.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:31.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:31.005][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:31.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:04:31.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:31.011][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:04:31.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:31.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:31.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:31.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:31.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:31.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:31.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:31.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:31.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:31.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:31.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:31.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:31.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:31.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:31.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:31.100][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:31.103][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:31.105][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:31.107][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:31.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:31.919][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:31.922][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-09-07 16:04:31.927][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-09-07 16:04:31.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:31.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:31.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:31.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:31.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:31.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:31.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:31.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:31.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:31.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:31.977][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-09-07 16:04:31.979][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:31.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-09-07 16:04:31.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:31.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:31.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:31.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:31.988][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:31.989][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:31.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:31.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:31.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:32.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:32.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:32.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:32.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:32.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-09-07 16:04:32.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:32.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:32.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-09-07 16:04:32.381][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-09-07 16:04:32.739][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:32.741][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-09-07 16:04:32.746][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-09-07 16:04:32.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-09-07 16:04:32.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:32.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:32.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:32.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:32.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:32.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:32.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:32.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:32.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:32.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:32.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.777][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.784][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:32.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:32.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:32.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:32.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:32.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:32.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:32.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:32.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:32.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:32.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.834][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:32.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:32.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:32.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.855][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:32.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:32.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.865][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:32.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:32.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:32.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:32.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:32.935][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-09-07 16:04:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:32.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:32.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:32.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:32.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:32.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:32.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:32.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:32.974][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-09-07 16:04:32.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:32.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-09-07 16:04:32.979][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:32.980][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:32.981][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:32.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:32.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:32.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:32.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:32.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:32.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:32.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:32.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:33.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:33.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:33.002][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-09-07 16:04:33.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:33.007][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:33.008][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-09-07 16:04:33.372][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-09-07 16:04:33.746][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:33.749][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-09-07 16:04:33.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-09-07 16:04:33.757][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-09-07 16:04:33.760][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:33.762][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:33.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:33.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:33.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:33.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:33.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:33.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:33.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:33.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:33.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.791][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:33.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:33.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:33.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.801][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:33.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:33.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:33.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:33.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:33.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:33.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:33.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.842][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:33.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:33.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:33.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:33.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.862][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:33.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:33.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.872][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:33.874][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:33.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:33.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:33.941][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-09-07 16:04:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:33.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:33.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:33.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:33.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:33.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:33.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:33.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:33.971][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-09-07 16:04:33.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:33.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-09-07 16:04:33.976][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:33.978][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:33.979][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:33.980][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:33.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:33.983][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:33.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:33.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:33.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:33.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:33.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:33.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:33.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:34.000][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-09-07 16:04:34.003][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:34.004][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:34.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-09-07 16:04:34.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-09-07 16:04:34.742][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:34.744][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-09-07 16:04:34.749][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-09-07 16:04:34.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-09-07 16:04:34.756][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:34.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:34.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:34.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:34.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:34.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:34.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:34.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:34.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:34.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:34.776][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.780][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.786][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:34.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.797][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:34.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:34.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:34.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:34.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:34.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:34.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:34.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:34.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.838][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:34.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:34.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:34.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:34.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:34.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:34.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:34.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:34.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.892][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:34.947][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-09-07 16:04:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:34.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:34.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:34.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:34.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:34.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:34.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:34.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:34.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:34.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:34.990][private$selectFields]
biodb.TRACE[2024-09-07 16:04:34.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:34.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:34.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:34.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:34.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:34.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.012][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:04:35.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.055][private$selectFields]
biodb.TRACE[2024-09-07 16:04:35.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:35.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:35.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.071][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.076][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-09-07 16:04:35.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.120][private$selectFields]
biodb.TRACE[2024-09-07 16:04:35.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:35.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:35.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.129][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.134][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-09-07 16:04:35.160][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:35.161][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:35.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:35.250][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:35.253][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:35.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:04:35.257][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:35.259][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:04:35.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:35.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:35.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:04:35.269][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:35.272][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:04:35.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:35.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:35.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:35.366][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:35.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.392][private$selectFields]
biodb.TRACE[2024-09-07 16:04:35.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:35.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:35.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.400][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.405][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:04:35.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.456][private$selectFields]
biodb.TRACE[2024-09-07 16:04:35.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:35.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:35.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.472][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.478][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:35.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.520][private$selectFields]
biodb.TRACE[2024-09-07 16:04:35.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:35.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:35.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.529][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.533][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:35.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.541][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:35.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:04:35.562][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:35.563][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:35.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:35.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:35.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:35.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:35.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:35.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:35.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:35.581][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:35.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:35.586][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:35.588][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:35.958][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:36.762][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:36.765][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-09-07 16:04:36.770][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-09-07 16:04:36.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:36.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:36.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:36.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:36.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:36.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:36.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:36.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:36.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:36.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:36.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:36.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:36.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:36.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:36.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:36.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:36.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:36.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:36.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:36.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:36.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:36.846][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-09-07 16:04:36.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:36.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-09-07 16:04:36.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:36.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:36.854][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:36.855][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:36.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:36.858][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:36.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:36.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:36.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:36.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:36.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:36.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:36.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:36.875][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-09-07 16:04:36.878][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:36.879][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:36.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-09-07 16:04:37.238][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-09-07 16:04:37.603][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:37.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-09-07 16:04:37.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-09-07 16:04:37.615][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-09-07 16:04:37.618][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:37.619][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:37.621][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:37.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:37.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:37.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:37.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:37.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:37.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:37.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:37.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.658][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:37.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:37.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.661][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.668][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:37.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:37.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:37.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:37.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:37.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:37.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.692][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:37.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.702][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.708][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:37.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.722][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:37.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:37.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.739][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:37.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:37.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.742][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:37.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:37.809][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-09-07 16:04:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:37.825][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:37.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:37.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:37.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:37.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:37.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:37.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:37.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.852][private$selectFields]
biodb.TRACE[2024-09-07 16:04:37.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:37.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:37.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.861][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.873][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:04:37.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:37.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:37.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:37.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:37.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:37.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:37.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.917][private$selectFields]
biodb.TRACE[2024-09-07 16:04:37.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:37.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:37.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.925][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.930][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.938][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:04:37.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:37.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:37.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:37.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:37.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:37.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:37.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.982][private$selectFields]
biodb.TRACE[2024-09-07 16:04:37.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:37.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:37.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:37.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:37.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:37.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.997][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:37.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-09-07 16:04:38.021][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:38.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:38.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:38.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:38.044][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:38.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:04:38.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:38.050][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:04:38.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:38.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:38.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:38.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:38.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:38.161][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-09-07 16:04:38.162][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:38.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-09-07 16:04:38.166][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:38.167][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:38.168][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:38.170][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:38.171][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:38.172][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:38.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:38.189][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-09-07 16:04:38.192][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:38.194][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:38.195][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-09-07 16:04:38.570][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-09-07 16:04:38.933][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:38.936][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-09-07 16:04:38.942][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-09-07 16:04:38.946][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-09-07 16:04:38.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:38.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:38.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:38.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:38.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:38.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:38.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:38.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:38.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:38.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:38.969][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:38.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:38.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.979][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:38.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:38.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.989][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:38.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:38.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:38.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:39.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:39.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:39.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:39.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:39.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:39.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.025][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:39.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:39.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.039][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:39.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:39.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:39.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.059][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:39.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:39.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:39.124][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-09-07 16:04:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:39.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:39.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:39.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:39.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:39.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:39.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:39.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:39.154][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-09-07 16:04:39.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:39.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-09-07 16:04:39.159][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:39.161][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:39.162][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:39.163][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:39.164][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:39.166][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:39.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:39.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:39.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:39.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:39.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:39.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:39.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:39.183][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-09-07 16:04:39.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:39.187][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:39.189][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-09-07 16:04:39.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-09-07 16:04:39.914][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:39.917][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-09-07 16:04:39.922][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-09-07 16:04:39.927][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-09-07 16:04:39.929][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:39.931][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:39.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:39.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:39.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:39.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:39.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:39.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:39.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:39.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:39.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.960][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:39.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:39.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:39.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:39.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:39.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:39.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:39.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:39.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:39.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:40.011][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:40.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.014][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:40.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:40.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:40.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:40.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:40.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:40.046][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:40.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:40.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:40.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.058][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:40.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:40.114][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-09-07 16:04:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:40.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:40.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:40.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:40.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:40.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:40.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:40.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:40.145][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-09-07 16:04:40.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:40.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-09-07 16:04:40.149][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:40.151][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:40.152][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:40.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:40.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:40.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:40.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:40.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:40.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:40.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:40.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:40.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:40.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:40.173][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-09-07 16:04:40.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:40.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:40.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-09-07 16:04:40.538][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-09-07 16:04:40.914][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:40.917][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-09-07 16:04:40.921][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-09-07 16:04:40.925][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-09-07 16:04:40.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:40.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:40.931][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:40.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:40.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:40.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:40.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:40.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:40.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:40.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:40.949][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.959][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:40.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:40.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.969][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:40.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:40.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:40.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:40.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:41.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:41.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.010][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:41.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:41.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.031][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:41.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:41.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.051][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:41.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:41.112][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-09-07 16:04:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:41.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:41.142][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-09-07 16:04:41.143][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:41.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-09-07 16:04:41.147][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:41.156][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:41.158][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:41.159][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:41.160][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:41.161][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:41.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:41.178][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-09-07 16:04:41.182][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:41.183][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:41.184][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-09-07 16:04:41.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-09-07 16:04:41.912][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:41.915][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-09-07 16:04:41.921][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-09-07 16:04:41.926][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-09-07 16:04:41.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:41.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:41.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:41.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:41.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.960][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:41.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:41.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:41.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:41.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:41.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:41.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:42.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.005][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:42.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.009][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.019][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:42.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:42.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.036][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:42.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:42.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.047][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:42.048][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:42.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:42.106][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-09-07 16:04:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:42.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:42.136][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-09-07 16:04:42.137][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:42.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-09-07 16:04:42.141][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:42.142][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:42.144][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:42.145][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:42.146][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:42.148][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:42.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:42.165][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-09-07 16:04:42.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:42.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:42.171][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-09-07 16:04:42.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-09-07 16:04:42.899][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:42.901][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-09-07 16:04:42.906][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-09-07 16:04:42.910][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-09-07 16:04:42.913][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:42.914][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:42.916][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:42.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:42.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:42.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.944][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:42.945][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:42.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:42.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:42.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:42.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:42.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:42.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:42.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.978][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.984][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:42.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:42.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.990][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:42.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:42.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:42.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.010][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:43.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:43.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:43.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.020][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:43.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:43.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:43.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:43.099][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-09-07 16:04:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:43.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:43.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:43.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:43.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:43.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:43.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:43.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:43.129][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-09-07 16:04:43.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:43.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-09-07 16:04:43.134][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:43.135][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:43.137][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:43.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:43.139][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:43.140][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:43.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:43.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:43.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:43.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:43.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:43.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:43.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:43.157][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-09-07 16:04:43.160][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:43.162][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:43.163][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-09-07 16:04:43.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-09-07 16:04:43.882][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:43.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-09-07 16:04:43.890][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-09-07 16:04:43.894][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-09-07 16:04:43.896][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:43.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:43.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:43.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:43.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:43.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:43.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:43.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:43.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:43.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:43.917][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.928][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:43.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:43.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.938][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:43.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:43.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:43.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:43.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:43.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:43.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.973][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:43.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:43.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:43.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.004][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:44.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:44.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:44.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:44.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:44.073][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-09-07 16:04:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:44.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:44.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:44.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:44.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:44.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:44.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:44.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:44.103][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-09-07 16:04:44.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:44.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-09-07 16:04:44.108][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:44.109][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:44.111][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:44.112][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:44.113][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:44.114][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:44.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:44.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:44.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:44.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:44.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:44.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:44.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:44.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-09-07 16:04:44.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:44.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:44.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-09-07 16:04:44.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-09-07 16:04:44.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:44.863][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-09-07 16:04:44.867][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-09-07 16:04:44.871][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-09-07 16:04:44.874][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:44.875][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:44.877][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:44.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:44.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:44.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:44.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:44.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:44.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:44.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:44.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.904][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:44.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:44.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.908][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:44.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:44.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:44.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:44.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:44.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:44.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:44.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:44.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.974][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:44.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:44.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:44.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:44.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.004][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:45.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:45.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:45.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:45.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.073][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-09-07 16:04:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:45.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.116][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.125][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.132][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.138][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-09-07 16:04:45.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.181][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.202][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-09-07 16:04:45.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.253][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-09-07 16:04:45.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:45.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:04:45.326][biodb::testThat]
biodb.INFO [2024-09-07 16:04:45.327][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-09-07 16:04:45.329][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:04:45.330][biodb::testThat]
biodb.TRACE[2024-09-07 16:04:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:45.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:45.436][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:45.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:04:45.439][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:45.441][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:04:45.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:45.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:45.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:04:45.480][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:45.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:04:45.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.543][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:45.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.573][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.581][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.588][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.593][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-09-07 16:04:45.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.637][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.650][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.653][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.658][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:45.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.702][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.722][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-09-07 16:04:45.741][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:45.742][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:45.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:45.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:45.763][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:45.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:04:45.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:45.768][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:04:45.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.836][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:45.839][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:45.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:04:45.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:45.845][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:04:45.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:45.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:45.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.961][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:45.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:04:46.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.025][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:04:46.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.088][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.101][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.108][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:04:46.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:46.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:46.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:46.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:46.150][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:46.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-09-07 16:04:46.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:46.155][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-09-07 16:04:46.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:46.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:46.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:04:46.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:46.401][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:04:46.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:46.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.519][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.527][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:04:46.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.583][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.597][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.599][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.605][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:04:46.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.647][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.655][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.660][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.667][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:04:46.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:46.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:46.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:46.803][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:46.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:04:46.806][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:46.808][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:04:46.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:46.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:46.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:04:46.818][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:46.820][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:04:46.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:46.909][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:46.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.936][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.956][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:04:46.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:46.999][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.015][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.019][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.021][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:04:47.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.063][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.076][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:04:47.101][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:47.102][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:47.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:47.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:47.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:47.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-09-07 16:04:47.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:47.129][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-09-07 16:04:47.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.225][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:47.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.252][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:04:47.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.316][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.337][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:04:47.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.379][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:04:47.418][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:47.419][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:47.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:47.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:47.440][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:47.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:04:47.444][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:47.446][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:04:47.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.535][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:47.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.563][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:04:47.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.634][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.649][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.655][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-09-07 16:04:47.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.697][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.706][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.713][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:47.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.718][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-09-07 16:04:47.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:47.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:47.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:47.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:47.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.792][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:04:47.794][biodb::testThat]
biodb.INFO [2024-09-07 16:04:47.795][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-09-07 16:04:47.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:04:47.797][biodb::testThat]
biodb.TRACE[2024-09-07 16:04:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:47.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:47.891][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:47.895][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:47.896][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:47.898][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:48.281][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:48.734][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:48.737][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-09-07 16:04:48.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-09-07 16:04:48.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:48.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:48.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:48.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:48.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:48.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:48.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:48.764][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-09-07 16:04:48.766][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:48.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-09-07 16:04:48.769][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:48.771][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:48.772][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:48.774][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:48.775][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:48.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:48.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:48.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:48.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:48.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:48.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:48.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:48.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:48.794][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-09-07 16:04:48.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:48.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:48.800][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-09-07 16:04:49.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-09-07 16:04:49.528][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:49.531][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-09-07 16:04:49.536][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-09-07 16:04:49.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-09-07 16:04:49.542][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:49.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:49.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:49.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:49.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.573][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:49.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.592][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:49.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:49.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:49.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:49.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:49.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:49.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:49.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.633][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:49.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:49.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:49.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:49.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:49.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.667][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:49.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:49.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:49.732][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-09-07 16:04:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:49.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:49.762][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-09-07 16:04:49.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:49.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-09-07 16:04:49.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:49.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:49.770][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:49.771][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:49.772][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:49.773][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:49.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:49.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-09-07 16:04:49.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:49.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:49.796][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-09-07 16:04:50.156][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-09-07 16:04:50.529][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:50.532][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-09-07 16:04:50.537][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-09-07 16:04:50.541][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-09-07 16:04:50.544][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:50.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:50.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:50.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:50.566][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.576][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:50.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:50.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.587][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:50.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:50.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:50.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:50.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:50.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:50.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:50.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:50.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:50.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.628][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:50.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:50.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:50.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:50.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:50.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.652][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.659][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:50.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:50.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.662][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:50.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.672][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:50.729][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-09-07 16:04:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:50.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:50.767][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-09-07 16:04:50.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:50.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-09-07 16:04:50.772][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:50.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:50.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:50.776][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:50.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:50.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:50.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:50.796][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-09-07 16:04:50.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:50.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:50.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-09-07 16:04:51.163][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-09-07 16:04:51.525][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:51.528][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-09-07 16:04:51.533][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-09-07 16:04:51.537][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-09-07 16:04:51.539][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:51.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:51.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:51.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:51.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.573][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:51.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:51.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:51.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:51.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:51.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:51.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.597][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:51.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:51.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.607][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:51.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:51.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.617][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.619][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:51.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:51.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:51.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.633][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.639][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:51.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.643][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:51.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:51.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.653][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.660][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:51.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:51.719][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-09-07 16:04:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:51.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:51.748][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-09-07 16:04:51.750][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:51.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-09-07 16:04:51.753][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:51.755][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:51.756][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:51.757][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:51.758][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:51.760][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:51.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:51.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-09-07 16:04:51.779][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:51.781][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:51.782][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-09-07 16:04:52.142][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-09-07 16:04:52.502][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:52.505][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-09-07 16:04:52.510][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-09-07 16:04:52.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-09-07 16:04:52.516][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:52.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:52.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:52.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:52.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:52.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:52.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:52.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:52.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:52.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:52.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.546][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:52.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:52.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:52.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:52.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:52.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:52.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.559][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:52.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:52.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.569][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:52.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:52.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:52.587][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:52.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.591][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:52.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:52.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:52.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.611][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:52.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:52.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.614][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:52.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:52.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.633][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:52.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:52.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.643][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:52.698][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-09-07 16:04:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:52.714][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:52.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:52.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:52.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:52.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:52.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:52.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:52.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.741][private$selectFields]
biodb.TRACE[2024-09-07 16:04:52.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:52.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:52.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:04:52.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:52.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:52.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:52.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:52.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:52.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:52.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.805][private$selectFields]
biodb.TRACE[2024-09-07 16:04:52.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:52.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:52.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-09-07 16:04:52.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:52.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:52.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:52.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:52.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:52.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:52.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.868][private$selectFields]
biodb.TRACE[2024-09-07 16:04:52.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:52.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:52.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.881][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.884][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:04:52.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.888][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:04:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:52.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-09-07 16:04:52.907][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:52.908][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:52.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:52.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:52.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:52.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:52.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:52.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:52.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:52.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:04:52.930][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:52.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:52.933][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:04:53.294][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:04:53.670][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:53.673][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-09-07 16:04:53.679][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-09-07 16:04:53.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:53.698][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-09-07 16:04:53.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:53.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-09-07 16:04:53.702][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:53.704][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:53.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:53.707][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:53.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:53.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:53.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:53.726][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-09-07 16:04:53.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:53.730][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:53.732][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-09-07 16:04:54.106][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-09-07 16:04:54.482][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:54.485][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-09-07 16:04:54.490][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-09-07 16:04:54.494][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-09-07 16:04:54.496][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:54.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:54.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:54.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:54.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:54.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:54.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:54.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:54.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:54.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:54.516][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.526][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:54.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:54.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.546][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:54.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:54.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:54.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:54.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:54.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:54.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:54.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:54.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:54.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.582][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:54.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.587][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:54.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.612][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:54.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:54.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:54.624][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:54.682][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-09-07 16:04:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:54.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:54.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:54.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:54.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:54.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:54.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:54.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:54.712][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-09-07 16:04:54.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:54.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-09-07 16:04:54.717][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:54.718][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:54.720][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:54.721][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:54.722][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:54.723][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:54.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:54.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:54.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:54.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:54.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:54.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:54.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:54.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-09-07 16:04:54.744][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:54.745][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:54.747][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-09-07 16:04:55.110][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-09-07 16:04:55.486][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:55.489][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-09-07 16:04:55.718][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-09-07 16:04:55.723][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-09-07 16:04:55.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:55.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:55.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:55.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:55.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:55.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:55.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:55.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:55.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:55.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:55.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.750][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.757][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:55.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:55.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.771][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:55.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:55.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:55.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:55.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:55.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.791][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:55.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:55.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.801][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.803][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:55.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.823][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:55.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.837][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:55.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:55.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:55.903][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-09-07 16:04:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:55.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:55.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:55.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:55.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:55.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:55.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:55.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:55.942][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-09-07 16:04:55.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:55.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-09-07 16:04:55.947][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:55.948][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:55.950][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:55.951][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:55.952][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:55.953][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:55.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:55.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:55.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:55.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:55.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:55.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:55.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:55.971][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-09-07 16:04:55.974][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:55.975][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:55.977][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-09-07 16:04:56.336][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-09-07 16:04:56.695][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:56.698][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-09-07 16:04:56.703][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-09-07 16:04:56.707][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-09-07 16:04:56.709][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:56.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:56.713][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:56.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:56.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:56.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:56.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:56.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:56.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:56.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:56.730][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.740][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:56.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:56.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.750][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:56.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:56.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:56.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:56.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:56.782][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:56.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.786][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:56.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.791][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:56.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:56.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:56.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:56.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:56.886][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-09-07 16:04:56.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:56.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:56.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:56.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:56.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:56.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:56.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:56.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:56.916][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-09-07 16:04:56.917][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:56.919][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-09-07 16:04:56.920][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:56.922][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:56.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:56.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:56.926][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:56.927][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:56.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:56.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:56.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:56.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:56.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:56.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:56.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:56.944][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-09-07 16:04:56.947][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:56.948][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:56.950][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-09-07 16:04:57.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-09-07 16:04:57.675][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:57.679][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-09-07 16:04:57.684][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-09-07 16:04:57.688][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-09-07 16:04:57.691][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:57.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:57.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:57.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:57.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:57.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:57.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:57.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:57.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:57.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:57.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.721][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:57.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.731][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:57.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:57.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:57.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:57.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.755][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:57.762][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:57.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.766][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:57.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.780][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.796][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:57.797][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:57.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:57.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:57.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:57.873][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-09-07 16:04:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:57.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:57.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:57.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:57.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:57.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:57.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:57.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:57.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:57.903][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-09-07 16:04:57.904][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:57.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-09-07 16:04:57.907][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:57.909][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:57.910][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:57.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:57.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:57.914][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:57.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:57.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:57.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:57.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:57.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:57.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:57.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:57.930][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-09-07 16:04:57.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:57.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:57.936][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-09-07 16:04:58.296][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-09-07 16:04:58.657][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:58.660][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-09-07 16:04:58.664][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-09-07 16:04:58.668][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-09-07 16:04:58.671][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:58.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:58.674][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:58.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:58.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:58.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:58.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:58.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:58.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:58.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:58.691][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.695][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.702][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:58.703][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.712][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:58.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:58.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:58.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:58.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.736][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:58.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:58.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.752][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:58.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:58.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.772][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.783][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:58.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:58.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.786][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:58.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:58.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:58.852][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-09-07 16:04:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:58.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:58.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:58.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:58.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:58.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:58.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:58.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:58.882][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-09-07 16:04:58.883][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:58.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-09-07 16:04:58.887][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:58.888][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:58.890][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:58.891][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:58.892][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:58.893][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:58.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:58.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:58.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:58.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:58.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:58.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:58.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:58.910][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-09-07 16:04:58.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:58.915][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:58.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-09-07 16:04:59.275][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-09-07 16:04:59.639][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:59.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-09-07 16:04:59.647][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-09-07 16:04:59.651][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-09-07 16:04:59.654][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:04:59.656][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:04:59.658][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:04:59.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:59.676][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.695][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:59.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.699][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:04:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:04:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.706][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.709][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:59.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:59.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:04:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:04:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:59.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:04:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:04:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:59.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:04:59.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.741][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:59.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.746][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:04:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.755][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.761][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.772][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:59.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:04:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:04:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:59.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:59.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:04:59.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:04:59.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:59.841][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-09-07 16:04:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:59.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:59.872][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-09-07 16:04:59.873][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:04:59.875][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-09-07 16:04:59.876][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:04:59.878][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:04:59.879][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:04:59.880][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:04:59.882][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:04:59.883][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:04:59.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:59.900][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-09-07 16:04:59.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:59.904][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:59.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-09-07 16:05:00.279][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-09-07 16:05:00.648][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:00.651][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-09-07 16:05:00.656][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-09-07 16:05:00.660][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-09-07 16:05:00.662][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:00.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:00.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:00.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:00.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:00.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:00.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:00.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:00.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:00.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:00.682][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.686][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.692][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:00.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:00.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.696][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:00.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:00.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.702][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:00.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:00.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.706][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:00.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:00.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:00.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:00.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:00.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:00.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:00.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:00.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.736][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.743][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:00.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.763][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:00.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:00.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.773][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:00.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:00.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:00.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:00.784][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:00.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.786][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:00.841][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-09-07 16:05:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:00.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:00.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:00.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:00.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:00.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:00.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:00.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:00.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:00.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:00.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.893][private$selectFields]
biodb.TRACE[2024-09-07 16:05:00.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:00.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:00.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.905][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.908][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.913][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:00.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-09-07 16:05:00.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:00.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:00.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:00.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:00.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:00.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:00.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:00.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.956][private$selectFields]
biodb.TRACE[2024-09-07 16:05:00.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:00.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:00.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.971][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:00.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-09-07 16:05:00.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:00.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:00.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:01.020][private$selectFields]
biodb.TRACE[2024-09-07 16:05:01.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:01.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:01.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:01.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:01.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:01.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-09-07 16:05:01.058][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:01.059][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:01.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:01.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:01.081][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:01.082][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:01.084][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:01.448][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:01.808][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:01.811][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-09-07 16:05:01.816][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-09-07 16:05:01.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:01.835][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-09-07 16:05:01.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:01.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-09-07 16:05:01.840][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:01.841][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:01.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:01.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:01.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:01.847][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:01.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:01.864][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-09-07 16:05:01.867][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:01.869][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:01.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-09-07 16:05:02.230][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-09-07 16:05:02.600][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:02.603][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-09-07 16:05:02.608][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-09-07 16:05:02.612][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-09-07 16:05:02.614][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:02.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:02.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:02.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:02.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:02.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:02.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:02.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:02.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:02.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:02.635][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.638][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.645][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:02.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:02.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:02.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:02.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:02.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:02.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:02.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:02.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:02.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:02.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.689][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.691][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:02.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.694][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:02.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.704][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.711][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:02.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.714][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.721][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:02.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:02.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:02.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:02.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:02.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:02.800][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-09-07 16:05:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:02.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:02.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:02.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:02.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:02.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:02.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:02.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:02.830][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-09-07 16:05:02.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:02.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-09-07 16:05:02.835][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:02.836][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:02.838][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:02.839][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:02.840][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:02.842][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:02.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:02.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:02.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:02.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:02.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:02.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:02.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:02.859][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-09-07 16:05:02.862][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:02.863][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:02.865][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-09-07 16:05:03.237][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-09-07 16:05:03.613][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:03.616][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-09-07 16:05:03.620][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-09-07 16:05:03.624][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-09-07 16:05:03.627][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:03.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:03.630][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:03.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:03.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:03.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:03.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:03.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:03.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:03.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:03.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.657][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:03.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:03.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.661][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:03.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:03.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.667][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:03.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:03.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.681][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:03.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:03.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.691][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:03.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:03.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.703][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:03.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:03.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.717][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.723][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:03.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:03.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:03.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:03.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.747][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:03.803][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-09-07 16:05:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:03.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:03.824][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:03.825][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:03.827][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:04.186][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:04.549][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:04.552][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-09-07 16:05:04.558][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-09-07 16:05:04.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:04.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:04.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:04.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:04.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:04.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:04.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:04.627][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-09-07 16:05:04.628][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:04.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-09-07 16:05:04.632][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:04.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:04.634][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:04.636][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:04.637][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:04.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:04.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:04.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:04.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:04.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:04.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:04.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:04.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:04.655][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-09-07 16:05:04.658][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:04.659][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:04.661][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-09-07 16:05:05.022][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-09-07 16:05:05.392][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:05.395][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-09-07 16:05:05.400][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-09-07 16:05:05.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-09-07 16:05:05.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:05.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:05.416][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:05.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:05.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:05.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:05.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:05.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:05.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:05.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:05.438][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.448][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:05.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:05.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.452][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:05.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:05.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.458][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:05.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:05.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:05.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:05.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:05.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.494][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:05.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.501][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:05.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:05.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:05.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:05.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:05.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:05.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:05.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:05.604][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-09-07 16:05:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:05.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:05.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:05.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:05.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:05.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:05.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:05.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:05.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:05.634][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-09-07 16:05:05.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:05.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-09-07 16:05:05.639][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:05.641][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:05.642][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:05.643][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:05.645][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:05.646][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:05.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:05.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:05.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:05.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:05.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:05.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:05.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:05.663][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-09-07 16:05:05.666][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:05.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:05.669][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-09-07 16:05:06.033][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-09-07 16:05:06.399][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:06.402][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-09-07 16:05:06.407][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-09-07 16:05:06.411][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-09-07 16:05:06.414][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:06.415][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:06.417][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:06.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:06.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:06.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:06.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:06.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:06.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:06.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:06.434][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.444][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:06.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:06.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.455][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:06.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:06.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:06.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:06.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.479][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:06.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:06.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:06.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.489][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.496][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:06.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:06.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.510][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.516][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.527][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:06.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:06.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.531][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:06.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:06.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.541][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:06.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:06.606][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-09-07 16:05:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:06.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:06.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:06.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:06.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:06.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:06.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:06.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:06.636][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-09-07 16:05:06.638][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:06.639][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-09-07 16:05:06.641][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:06.642][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:06.644][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:06.645][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:06.646][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:06.647][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:06.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:06.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:06.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:06.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:06.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:06.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:06.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:06.665][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-09-07 16:05:06.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:06.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:06.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-09-07 16:05:07.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-09-07 16:05:07.394][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:07.397][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-09-07 16:05:07.401][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-09-07 16:05:07.405][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-09-07 16:05:07.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:07.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:07.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:07.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.428][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.438][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:07.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:07.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:07.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.452][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:07.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:07.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:07.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:07.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:07.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:07.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.478][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:07.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:07.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.483][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:07.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:07.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:07.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.497][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.503][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:07.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:07.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.514][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:07.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:07.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:07.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.527][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:07.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:07.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:07.585][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-09-07 16:05:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:07.601][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:07.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.628][private$selectFields]
biodb.TRACE[2024-09-07 16:05:07.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:07.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:07.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-09-07 16:05:07.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.693][private$selectFields]
biodb.TRACE[2024-09-07 16:05:07.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:07.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:07.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.706][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.708][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.714][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-09-07 16:05:07.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.764][private$selectFields]
biodb.TRACE[2024-09-07 16:05:07.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:07.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:07.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.772][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.777][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.779][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:07.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-09-07 16:05:07.802][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:07.803][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:07.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:07.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:07.849][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:07.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:05:07.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:07.855][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:05:07.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:07.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:07.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:07.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:05:07.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:07.896][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:05:07.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:07.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:07.955][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:07.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:07.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:07.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:07.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:07.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:07.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:07.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.982][private$selectFields]
biodb.TRACE[2024-09-07 16:05:07.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:07.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:07.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:07.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:07.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:07.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.997][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:07.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-09-07 16:05:08.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.045][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.058][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.067][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:05:08.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.109][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.117][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.131][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-09-07 16:05:08.148][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:08.149][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:08.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:08.174][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:08.178][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:08.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:05:08.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:08.183][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:05:08.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:08.248][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:08.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:05:08.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:08.253][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:05:08.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.347][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:08.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.374][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.382][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.387][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:08.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.438][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.446][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.453][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.459][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:05:08.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.502][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.510][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.522][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.523][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:05:08.541][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:08.542][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:08.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:08.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:08.564][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:08.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-09-07 16:05:08.567][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:08.569][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-09-07 16:05:08.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.812][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:08.815][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:08.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:05:08.819][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:08.821][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:05:08.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:08.912][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:08.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.938][private$selectFields]
biodb.TRACE[2024-09-07 16:05:08.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:08.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:08.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:08.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.960][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:05:08.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:08.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:08.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:08.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:08.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:08.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:08.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:08.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.002][private$selectFields]
biodb.TRACE[2024-09-07 16:05:09.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:09.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:09.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:05:09.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:09.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:09.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:09.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:09.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:09.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:09.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.082][private$selectFields]
biodb.TRACE[2024-09-07 16:05:09.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:09.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:09.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.097][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:09.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:05:09.121][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:09.122][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:09.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:09.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:09.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:09.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:09.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:09.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:09.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:09.169][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:09.170][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:09.172][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:09.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:09.897][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:09.899][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-09-07 16:05:09.905][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-09-07 16:05:09.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:09.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:09.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:09.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:09.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:09.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:09.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:09.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:09.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:09.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:09.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:09.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:09.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:09.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:09.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:09.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:09.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:09.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:09.983][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-09-07 16:05:09.984][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:09.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-09-07 16:05:09.988][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:09.989][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:09.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:09.992][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:09.993][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:09.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:09.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:09.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:10.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:10.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:10.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:10.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:10.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:10.012][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-09-07 16:05:10.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:10.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:10.018][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-09-07 16:05:10.381][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-09-07 16:05:10.756][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:10.759][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-09-07 16:05:10.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-09-07 16:05:10.768][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-09-07 16:05:10.770][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:10.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:10.773][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:10.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:10.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:10.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:10.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:10.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:10.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:10.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:10.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.800][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:10.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:10.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:10.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:10.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:10.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:10.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:10.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:10.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:10.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:10.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.857][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:10.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:10.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.863][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:10.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:10.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.878][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:10.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:10.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.893][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:10.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:10.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:10.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:10.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:10.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:10.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:10.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:10.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:10.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:10.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:11.004][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-09-07 16:05:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:11.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:11.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:11.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:11.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:11.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:11.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:11.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:11.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:11.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:11.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:11.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:11.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:11.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:11.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:11.064][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-09-07 16:05:11.065][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:11.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-09-07 16:05:11.069][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:11.070][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:11.072][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:11.073][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:11.074][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:11.075][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:11.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:11.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:11.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:11.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:11.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:11.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:11.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:11.092][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-09-07 16:05:11.095][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:11.097][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:11.098][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-09-07 16:05:11.458][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-09-07 16:05:11.819][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:11.822][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-09-07 16:05:11.827][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-09-07 16:05:11.831][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-09-07 16:05:11.833][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:11.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:11.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:11.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:11.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:11.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:11.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:11.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:11.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:11.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:11.854][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.864][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:11.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:11.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.868][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.874][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:11.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:11.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.878][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:11.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:11.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:11.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:11.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:11.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:11.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:11.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:11.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:11.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.914][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.916][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:11.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:11.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:11.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.936][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:11.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:11.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.939][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:11.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:11.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.946][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:11.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:11.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:11.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:11.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:11.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:11.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:11.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:11.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:12.015][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-09-07 16:05:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:12.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:12.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:12.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:12.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:12.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:12.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:12.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:12.045][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-09-07 16:05:12.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:12.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-09-07 16:05:12.050][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:12.051][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:12.053][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:12.054][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:12.055][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:12.056][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:12.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:12.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:12.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:12.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:12.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:12.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:12.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:12.074][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-09-07 16:05:12.078][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:12.079][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:12.080][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-09-07 16:05:12.441][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-09-07 16:05:12.802][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:12.805][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-09-07 16:05:12.809][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-09-07 16:05:12.814][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-09-07 16:05:12.816][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:12.818][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:12.819][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:12.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:12.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:12.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:12.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:12.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:12.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:12.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:12.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.847][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:12.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:12.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.857][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:12.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:12.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.861][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:12.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:12.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:12.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:12.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:12.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.891][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.893][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:12.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:12.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:12.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.914][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:12.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:12.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.917][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:12.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.924][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:12.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:12.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.928][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:12.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:12.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.938][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:12.993][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-09-07 16:05:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:12.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:13.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:13.010][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:13.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:13.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:13.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:13.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:13.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:13.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:13.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.038][private$selectFields]
biodb.TRACE[2024-09-07 16:05:13.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:13.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:13.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.059][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:05:13.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:13.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:13.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:13.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:13.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:13.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:13.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.106][private$selectFields]
biodb.TRACE[2024-09-07 16:05:13.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:13.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:13.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.119][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.128][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-09-07 16:05:13.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:13.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:13.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:13.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:13.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:13.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:13.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.171][private$selectFields]
biodb.TRACE[2024-09-07 16:05:13.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:13.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:13.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.184][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:13.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:13.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:13.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:13.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-09-07 16:05:13.210][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:13.211][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:13.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:13.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:13.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:13.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:13.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:13.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:13.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:13.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:13.233][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:13.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:13.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:13.600][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:14.046][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:14.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-09-07 16:05:14.054][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-09-07 16:05:14.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:14.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:14.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:14.158][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:14.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.185][private$selectFields]
biodb.TRACE[2024-09-07 16:05:14.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:14.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:14.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:14.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:14.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.248][private$selectFields]
biodb.TRACE[2024-09-07 16:05:14.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:14.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:14.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.261][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.270][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:05:14.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.312][private$selectFields]
biodb.TRACE[2024-09-07 16:05:14.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:14.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:14.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:14.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:14.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:05:14.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:14.353][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:14.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:14.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:14.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:14.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:14.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:14.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:14.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:14.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:14.374][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:14.376][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:14.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:14.739][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:15.101][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:15.105][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-09-07 16:05:15.111][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-09-07 16:05:15.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:15.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:15.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:15.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:15.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:15.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:15.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:15.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:15.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:15.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:15.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:15.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:15.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:15.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:15.159][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-09-07 16:05:15.160][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:15.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-09-07 16:05:15.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:15.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:15.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:15.168][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:15.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:15.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:15.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:15.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:15.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:15.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:15.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:15.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:15.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:15.188][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-09-07 16:05:15.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:15.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:15.194][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-09-07 16:05:15.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-09-07 16:05:15.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:15.914][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-09-07 16:05:15.920][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-09-07 16:05:15.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-09-07 16:05:15.926][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:15.928][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:15.929][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:15.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:15.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:15.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:15.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:15.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:15.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:15.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:15.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:15.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:15.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.957][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:15.958][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:15.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.961][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:15.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:15.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:15.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:15.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:15.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:15.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:15.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:15.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:15.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:16.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.013][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:16.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:16.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:16.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:16.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:16.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:16.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:16.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.044][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:16.045][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:16.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:16.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:16.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:16.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:16.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:16.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:16.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:16.113][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-09-07 16:05:16.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:16.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:16.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:16.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:16.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:16.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:16.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:16.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:16.144][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-09-07 16:05:16.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:16.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-09-07 16:05:16.149][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:16.150][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:16.151][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:16.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:16.154][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:16.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:16.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:16.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:16.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:16.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:16.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:16.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:16.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:16.173][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-09-07 16:05:16.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:16.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:16.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-09-07 16:05:16.539][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-09-07 16:05:16.901][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:16.903][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-09-07 16:05:16.908][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-09-07 16:05:16.912][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-09-07 16:05:16.914][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:16.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:16.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:16.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:16.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:16.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:16.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:16.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:16.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:16.935][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.938][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:16.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.945][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:16.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:16.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:16.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:16.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:16.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:16.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:16.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:16.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:16.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:16.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.979][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:16.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.989][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.991][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:16.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:17.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:17.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.004][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:17.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.011][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:17.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:17.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:17.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:17.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:17.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:17.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:17.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:17.091][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-09-07 16:05:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:17.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:17.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:17.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:17.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:17.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:17.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:17.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:17.121][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-09-07 16:05:17.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:17.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-09-07 16:05:17.126][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:17.128][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:17.129][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:17.131][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:17.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:17.133][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:17.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:17.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:17.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:17.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:17.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:17.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:17.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:17.150][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-09-07 16:05:17.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:17.163][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:17.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-09-07 16:05:17.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-09-07 16:05:17.902][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:17.905][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-09-07 16:05:17.910][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-09-07 16:05:17.914][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-09-07 16:05:17.916][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:17.918][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:17.920][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:17.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:17.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:17.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:17.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:17.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:17.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:17.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:17.936][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.947][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:17.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:17.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:17.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:17.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:17.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:17.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:17.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:17.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:17.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.991][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:17.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:17.995][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:18.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:18.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.011][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:18.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:18.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:18.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:18.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:18.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:18.090][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-09-07 16:05:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:18.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:18.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:18.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:18.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:18.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:18.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:18.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:18.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:18.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:18.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:18.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:18.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:18.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:18.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:18.149][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-09-07 16:05:18.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:18.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-09-07 16:05:18.153][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:18.155][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:18.156][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:18.158][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:18.159][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:18.160][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:18.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:18.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:18.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:18.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:18.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:18.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:18.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:18.177][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-09-07 16:05:18.180][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:18.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:18.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-09-07 16:05:18.554][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-09-07 16:05:18.916][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:18.919][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-09-07 16:05:18.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-09-07 16:05:18.928][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-09-07 16:05:18.930][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:18.932][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:18.933][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:18.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:18.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:18.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:18.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:18.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:18.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:18.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:18.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.956][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.962][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:18.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:18.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.966][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:18.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:18.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:18.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:18.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:18.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:18.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:18.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:18.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:18.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:18.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:18.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:18.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:18.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:18.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:18.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:19.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:19.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:19.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:19.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.012][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:19.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:19.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:19.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:19.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:19.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:19.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:19.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.043][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:19.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:19.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:19.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:19.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:19.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:19.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:19.121][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-09-07 16:05:19.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:19.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:19.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:19.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:19.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:19.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:19.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:19.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:19.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:19.151][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-09-07 16:05:19.152][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:19.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-09-07 16:05:19.554][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:19.556][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:19.557][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:19.558][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:19.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:19.561][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:19.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:19.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:19.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:19.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:19.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:19.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:19.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:19.578][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-09-07 16:05:19.582][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:19.583][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:19.585][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-09-07 16:05:19.947][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-09-07 16:05:20.314][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:20.316][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-09-07 16:05:20.321][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-09-07 16:05:20.325][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-09-07 16:05:20.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:20.329][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:20.331][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:20.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:20.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:20.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:20.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:20.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:20.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:20.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:20.348][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.359][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:20.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:20.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.363][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.369][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:20.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:20.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.373][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:20.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:20.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:20.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:20.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:20.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:20.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.400][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:20.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:20.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:20.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.411][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:20.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:20.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:20.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.431][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:20.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:20.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:20.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:20.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:20.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.456][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:20.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:20.518][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-09-07 16:05:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:20.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:20.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:20.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:20.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:20.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:20.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:20.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:20.551][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-09-07 16:05:20.553][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:20.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-09-07 16:05:20.556][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:20.558][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:20.559][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:20.560][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:20.562][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:20.563][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:20.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:20.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:20.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:20.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:20.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:20.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:20.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:20.580][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-09-07 16:05:20.583][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:20.584][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:20.586][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-09-07 16:05:20.944][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-09-07 16:05:21.309][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:21.312][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-09-07 16:05:21.318][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-09-07 16:05:21.322][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-09-07 16:05:21.324][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:21.326][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:21.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:21.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:21.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:21.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:21.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:21.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:21.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:21.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:21.344][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.365][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:21.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:21.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.375][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:21.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:21.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.378][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:21.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:21.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:21.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.405][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:21.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.410][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:21.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.415][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:21.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.431][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:21.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:21.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:21.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:21.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:21.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:21.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:21.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.456][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:21.512][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-09-07 16:05:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:21.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:21.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:21.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:21.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:21.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:21.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:21.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:21.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:21.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:21.543][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-09-07 16:05:21.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:21.546][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-09-07 16:05:21.548][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:21.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:21.552][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:21.553][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:21.555][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:21.556][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:21.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:21.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:21.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:21.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:21.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:21.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:21.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:21.573][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-09-07 16:05:21.577][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:21.578][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:21.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-09-07 16:05:21.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-09-07 16:05:22.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:22.303][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-09-07 16:05:22.308][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-09-07 16:05:22.312][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-09-07 16:05:22.315][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:22.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:22.318][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:22.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:22.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:22.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:22.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:22.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:22.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:22.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:22.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.340][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.346][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:22.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:22.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.356][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:22.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:22.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:22.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:22.384][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:22.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.386][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.392][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:22.394][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:22.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.396][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.398][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:22.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:22.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:22.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:22.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.418][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:22.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:22.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:22.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:22.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.432][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:22.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:22.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:22.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:22.497][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-09-07 16:05:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:23.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:23.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:23.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:23.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:23.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:23.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:23.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:23.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:23.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:23.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:23.189][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-09-07 16:05:23.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:23.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-09-07 16:05:23.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:23.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:23.197][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:23.198][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:23.199][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:23.200][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:23.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:23.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:23.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:23.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:23.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:23.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:23.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:23.218][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-09-07 16:05:23.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:23.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:23.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-09-07 16:05:23.584][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-09-07 16:05:24.351][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:24.354][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-09-07 16:05:24.359][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-09-07 16:05:24.363][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-09-07 16:05:24.365][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:24.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:24.368][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:24.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:24.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:24.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:24.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:24.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:24.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:24.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:24.385][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.396][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:24.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:24.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:24.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.406][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:24.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:24.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.410][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:24.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:24.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:24.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.420][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:24.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:24.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:24.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:24.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.437][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:24.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:24.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.443][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:24.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.446][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:24.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:24.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:24.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:24.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:24.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:24.486][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:24.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:24.544][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-09-07 16:05:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:24.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:24.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:24.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:24.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:24.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:24.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:24.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:24.577][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-09-07 16:05:24.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:24.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-09-07 16:05:24.582][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:24.583][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:24.584][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:24.586][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:24.587][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:24.588][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:24.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:24.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:24.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:24.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:24.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:24.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:24.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:24.606][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-09-07 16:05:24.609][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:24.610][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:24.612][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-09-07 16:05:24.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-09-07 16:05:25.332][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:25.335][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-09-07 16:05:25.340][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-09-07 16:05:25.344][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-09-07 16:05:25.346][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:25.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:25.349][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:25.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:25.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:25.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:25.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:25.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:25.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:25.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:25.366][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.377][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:25.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:25.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.380][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.387][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:25.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:25.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.391][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:25.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:25.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:25.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:25.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:25.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:25.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:25.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.423][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:25.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:25.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:25.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.437][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:25.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:25.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:25.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:25.466][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:25.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:25.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:25.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:25.533][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-09-07 16:05:25.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:25.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:25.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:25.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:25.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:25.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:25.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:25.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:25.564][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-09-07 16:05:25.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:25.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-09-07 16:05:25.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:25.570][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:25.571][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:25.572][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:25.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:25.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:25.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:25.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:25.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:25.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:25.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:25.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:25.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:25.592][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-09-07 16:05:25.595][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:25.597][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:25.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-09-07 16:05:25.957][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-09-07 16:05:26.318][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:26.322][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-09-07 16:05:26.328][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-09-07 16:05:26.332][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-09-07 16:05:26.334][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:26.336][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:26.338][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:26.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:26.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:26.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:26.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:26.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:26.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:26.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:26.355][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.366][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:26.367][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:26.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.369][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.376][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:26.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:26.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.380][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:26.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:26.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.390][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:26.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.397][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:26.398][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:26.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:26.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:26.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.413][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:26.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:26.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:26.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.427][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:26.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:26.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.447][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:26.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.453][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:26.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:26.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:26.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:26.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:26.524][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-09-07 16:05:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:26.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:26.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:26.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:26.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:26.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:26.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:26.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:26.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:26.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:26.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:26.554][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-09-07 16:05:26.556][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:26.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-09-07 16:05:26.559][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:26.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:26.562][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:26.563][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:26.565][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:26.566][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:26.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:26.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:26.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:26.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:26.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:26.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:26.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:26.583][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-09-07 16:05:26.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:26.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:26.589][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-09-07 16:05:27.206][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-09-07 16:05:27.577][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:27.580][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-09-07 16:05:27.585][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-09-07 16:05:27.589][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-09-07 16:05:27.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:27.603][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:27.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:27.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.627][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.633][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:27.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:27.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.643][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:27.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:27.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.647][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:27.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:27.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:27.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:27.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.674][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:27.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:27.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.678][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.679][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:27.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.683][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:27.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:27.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.693][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.699][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:27.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:27.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.703][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:27.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:27.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:27.721][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:27.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.724][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:27.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.780][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-09-07 16:05:27.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:27.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:27.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:27.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:27.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:27.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:27.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:27.984][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-09-07 16:05:27.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:27.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-09-07 16:05:27.989][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:27.990][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:27.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:27.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:27.994][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:27.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:27.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:27.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:28.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:28.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:28.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:28.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:28.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:28.012][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-09-07 16:05:28.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:28.017][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:28.018][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-09-07 16:05:28.379][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-09-07 16:05:28.749][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:28.752][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-09-07 16:05:28.758][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-09-07 16:05:28.770][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-09-07 16:05:28.777][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:28.779][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:28.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:28.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:28.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:28.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:28.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:28.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:28.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:28.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:28.799][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.803][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.809][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:28.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:28.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:28.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:28.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.823][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:28.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:28.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.834][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:28.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:28.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.844][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:28.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:28.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.854][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.855][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:28.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:28.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:28.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:28.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:28.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.886][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:28.887][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:28.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:28.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:28.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:28.957][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-09-07 16:05:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:28.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:28.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:28.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:28.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:28.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:28.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:28.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:29.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:29.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:29.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:29.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:29.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:29.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:29.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:29.016][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-09-07 16:05:29.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:29.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-09-07 16:05:29.021][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:29.022][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:29.024][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:29.025][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:29.026][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:29.028][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:29.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:29.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:29.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:29.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:29.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:29.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:29.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:29.045][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-09-07 16:05:29.048][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:29.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:29.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-09-07 16:05:29.421][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-09-07 16:05:30.469][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:30.471][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-09-07 16:05:30.476][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-09-07 16:05:30.480][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-09-07 16:05:30.482][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:30.484][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:30.485][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:30.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:30.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:30.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:30.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:30.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:30.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:30.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:30.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.514][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:30.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:30.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.524][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:30.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:30.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:30.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:30.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:30.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:30.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.559][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.561][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:30.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:30.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:30.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:30.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:30.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.592][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:30.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:30.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:30.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:30.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:30.674][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-09-07 16:05:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:30.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:30.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:30.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:30.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:30.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:30.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:30.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:30.704][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-09-07 16:05:30.706][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:30.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-09-07 16:05:30.709][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:30.711][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:30.712][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:30.713][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:30.715][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:30.716][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:30.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:30.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:30.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:30.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:30.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:30.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:30.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:30.733][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-09-07 16:05:30.736][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:30.737][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:30.739][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-09-07 16:05:31.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-09-07 16:05:31.457][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:31.460][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-09-07 16:05:31.465][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-09-07 16:05:31.468][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-09-07 16:05:31.471][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:31.472][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:31.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:31.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:31.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:31.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:31.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:31.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:31.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:31.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:31.492][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.502][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:31.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:31.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:31.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:31.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:31.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.527][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:31.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:31.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.537][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:31.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:31.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:31.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.549][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:31.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.553][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:31.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:31.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:31.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:31.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:31.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.583][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:31.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:31.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:31.650][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-09-07 16:05:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:31.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:31.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:31.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:31.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:31.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:31.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:31.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:31.681][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-09-07 16:05:31.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:31.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-09-07 16:05:31.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:31.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:31.689][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:31.690][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:31.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:31.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:31.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:31.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:31.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:31.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:31.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:31.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:31.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:31.710][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-09-07 16:05:31.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:31.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:31.716][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-09-07 16:05:32.077][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-09-07 16:05:32.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:32.441][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-09-07 16:05:32.446][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-09-07 16:05:32.450][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-09-07 16:05:32.453][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:32.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:32.456][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:32.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:32.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:32.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:32.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:32.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:32.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:32.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:32.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.483][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:32.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:32.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:32.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:32.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:32.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:32.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:32.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:32.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.541][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:32.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:32.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:32.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.562][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.571][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:32.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:32.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:32.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:32.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:32.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.587][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:32.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:32.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.597][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:32.653][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-09-07 16:05:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:32.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:32.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:32.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:32.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:32.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:32.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:32.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:32.683][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-09-07 16:05:32.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:32.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-09-07 16:05:32.688][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:32.690][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:32.691][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:32.692][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:32.694][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:32.695][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:32.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:32.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:32.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:32.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:32.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:32.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:32.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:32.712][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-09-07 16:05:32.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:32.716][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:32.718][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-09-07 16:05:33.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-09-07 16:05:33.666][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:33.668][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-09-07 16:05:33.673][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-09-07 16:05:34.953][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-09-07 16:05:34.956][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:34.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:34.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:34.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:34.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:34.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:34.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:34.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:34.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:34.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:34.976][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:34.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:34.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:34.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:34.986][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:34.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:34.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:34.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:34.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:34.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:34.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.000][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:35.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:35.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:35.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:35.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.027][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:35.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:35.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.033][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:35.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:35.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:35.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.053][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:35.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:35.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.064][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:35.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.067][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:35.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:35.134][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-09-07 16:05:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:35.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:35.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:35.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:35.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:35.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:35.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:35.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:35.173][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-09-07 16:05:35.175][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:35.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-09-07 16:05:35.179][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:35.180][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:35.181][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:35.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:35.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:35.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:35.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:35.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:35.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:35.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:35.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:35.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:35.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:35.203][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-09-07 16:05:35.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:35.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:35.209][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-09-07 16:05:35.566][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-09-07 16:05:35.927][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:35.930][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-09-07 16:05:35.936][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-09-07 16:05:35.940][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-09-07 16:05:35.942][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:35.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:35.945][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:35.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:35.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:35.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:35.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:35.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:35.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:35.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:35.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.973][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:35.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:35.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:35.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:35.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:35.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:35.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:35.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:35.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:35.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:36.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:36.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.019][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:36.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:36.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:36.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:36.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:36.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:36.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.050][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:36.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.053][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:36.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:36.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:36.119][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-09-07 16:05:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:36.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:36.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:36.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:36.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:36.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:36.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:36.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:36.149][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-09-07 16:05:36.151][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:36.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-09-07 16:05:36.154][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:36.155][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:36.157][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:36.158][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:36.159][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:36.160][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:36.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:36.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:36.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:36.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:36.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:36.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:36.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:36.178][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-09-07 16:05:36.181][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:36.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:36.184][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-09-07 16:05:36.797][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-09-07 16:05:37.159][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:37.162][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-09-07 16:05:37.167][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-09-07 16:05:37.171][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-09-07 16:05:37.174][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:37.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:37.177][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:37.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.204][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:37.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:37.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.208][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.215][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:37.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:37.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:37.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:37.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:37.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:37.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:37.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:37.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.249][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.251][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:37.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:37.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:37.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.271][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:37.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:37.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:37.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:37.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:37.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:37.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.363][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-09-07 16:05:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:37.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.435][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.443][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.451][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.457][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:05:37.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.500][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.501][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.508][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.521][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:05:37.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.566][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:05:37.605][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:37.606][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:37.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:37.651][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:37.655][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:37.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-09-07 16:05:37.658][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:37.661][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-09-07 16:05:37.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:37.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:37.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.819][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.835][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.840][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.841][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:05:37.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.884][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.893][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.898][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.900][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.905][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-09-07 16:05:37.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:37.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:37.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:37.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:37.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.949][private$selectFields]
biodb.TRACE[2024-09-07 16:05:37.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:37.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:37.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.965][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:37.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:37.987][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-09-07 16:05:37.989][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:37.990][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:37.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:37.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:37.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:38.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:38.012][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:38.013][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-09-07 16:05:38.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:38.017][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-09-07 16:05:38.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:38.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.261][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.270][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-09-07 16:05:38.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.327][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-09-07 16:05:38.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.393][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.394][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.406][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.413][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-09-07 16:05:38.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:38.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:38.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:38.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:38.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:38.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-09-07 16:05:38.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:38.461][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-09-07 16:05:38.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:38.527][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:38.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-09-07 16:05:38.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:38.533][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-09-07 16:05:38.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.633][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:38.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.660][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.676][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.682][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-09-07 16:05:38.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.725][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.733][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.738][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.741][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-09-07 16:05:38.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.791][private$selectFields]
biodb.TRACE[2024-09-07 16:05:38.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:38.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:38.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.807][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:38.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-09-07 16:05:38.830][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:38.832][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:38.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:38.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:38.881][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:38.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:05:38.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:38.887][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:05:38.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:38.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:38.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:05:38.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:38.929][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:05:38.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:38.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:38.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:38.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:38.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:38.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:38.991][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:38.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:38.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:38.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.019][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.039][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-09-07 16:05:39.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.093][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.109][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.113][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:05:39.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.158][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.180][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-09-07 16:05:39.198][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:39.199][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:39.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:39.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:39.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:39.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:05:39.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:39.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:05:39.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:39.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:39.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:05:39.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:39.297][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:05:39.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.388][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:39.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.415][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.430][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.437][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:39.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.480][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.497][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:05:39.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.554][private$selectFields]
biodb.TRACE[2024-09-07 16:05:39.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:39.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:39.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:39.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.576][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:05:39.594][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:39.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:39.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:39.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:39.617][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:39.618][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-09-07 16:05:39.620][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:39.622][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-09-07 16:05:39.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:39.863][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:39.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:05:39.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:39.868][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:05:39.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:39.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:39.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:39.986][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:39.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:39.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:39.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:39.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:39.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.014][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.029][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.035][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:05:40.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.079][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:05:40.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.144][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.147][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.160][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.166][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:05:40.184][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:40.185][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:40.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:40.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:40.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:40.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-09-07 16:05:40.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:40.239][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-09-07 16:05:40.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.425][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:40.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.452][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.460][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:05:40.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.517][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.533][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.538][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-09-07 16:05:40.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.582][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.598][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.604][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-09-07 16:05:40.622][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:40.623][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:40.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:40.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:40.644][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:40.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-09-07 16:05:40.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:40.650][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-09-07 16:05:40.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:40.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:40.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.770][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.786][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.791][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.792][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:40.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.844][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.857][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.860][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:05:40.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.910][private$selectFields]
biodb.TRACE[2024-09-07 16:05:40.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:40.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:40.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.918][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:40.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:40.949][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-09-07 16:05:40.950][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:40.951][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:40.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:40.969][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:40.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:40.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-09-07 16:05:40.976][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:40.978][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-09-07 16:05:40.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:40.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:40.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:40.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:40.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:40.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:40.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:41.808][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:41.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.835][private$selectFields]
biodb.TRACE[2024-09-07 16:05:41.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:41.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:41.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.843][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:05:41.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.899][private$selectFields]
biodb.TRACE[2024-09-07 16:05:41.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:41.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:41.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.908][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.920][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.921][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-09-07 16:05:41.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:41.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:41.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:41.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:41.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:41.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:41.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.966][private$selectFields]
biodb.TRACE[2024-09-07 16:05:41.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:41.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:41.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.979][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:41.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.987][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-09-07 16:05:42.005][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:42.006][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:05:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:42.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:42.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:42.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:42.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:42.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:42.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:42.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:42.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:42.114][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:42.115][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:42.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:42.496][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:43.025][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:43.028][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-09-07 16:05:43.034][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-09-07 16:05:43.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:43.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:43.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:43.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:43.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:43.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:43.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:43.211][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-09-07 16:05:43.212][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:43.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-09-07 16:05:43.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:43.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:43.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:43.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:43.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:43.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:43.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:43.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:43.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:43.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:43.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:43.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:43.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:43.240][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-09-07 16:05:43.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:43.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:43.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-09-07 16:05:43.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-09-07 16:05:43.970][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:43.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-09-07 16:05:43.978][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-09-07 16:05:43.981][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-09-07 16:05:44.640][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:44.642][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:44.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:44.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:44.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:44.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:44.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:44.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:44.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:44.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:44.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.672][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:44.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:44.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:44.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.685][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:44.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:44.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.695][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:44.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:44.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:44.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:44.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.722][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:44.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:44.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.736][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.742][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:44.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:44.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:44.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:44.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:44.822][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-09-07 16:05:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:44.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:44.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:44.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:44.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:44.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:44.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:44.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:44.852][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-09-07 16:05:44.853][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:44.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-09-07 16:05:44.857][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:44.858][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:44.860][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:44.861][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:44.862][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:44.872][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:44.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:44.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:44.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:44.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:44.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:44.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:44.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:44.890][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-09-07 16:05:44.893][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:44.894][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:44.896][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-09-07 16:05:45.256][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-09-07 16:05:45.632][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:45.635][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-09-07 16:05:45.640][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-09-07 16:05:45.643][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-09-07 16:05:45.646][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:45.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:45.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:45.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:45.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:45.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:45.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:45.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:45.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:45.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:45.666][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.676][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:45.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:45.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:45.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:45.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.689][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:45.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:45.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.700][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:45.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:45.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.726][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:45.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:45.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.747][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:45.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:45.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.757][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:45.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:45.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:45.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.771][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:45.826][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-09-07 16:05:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:45.842][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:45.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:45.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:45.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:45.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:45.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:45.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:45.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.869][private$selectFields]
biodb.TRACE[2024-09-07 16:05:45.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:45.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:45.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.877][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:05:45.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:45.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:45.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:45.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:45.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:45.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:45.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.933][private$selectFields]
biodb.TRACE[2024-09-07 16:05:45.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:45.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:45.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.955][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:05:45.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:45.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:45.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:45.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:45.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:45.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:45.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:45.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:45.997][private$selectFields]
biodb.TRACE[2024-09-07 16:05:45.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:46.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:46.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:46.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:46.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:46.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.026][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:46.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-09-07 16:05:46.046][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:46.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:46.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:46.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:46.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:46.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:46.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:46.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:46.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:46.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:46.069][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:46.070][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:46.072][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:46.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:47.075][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:47.078][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-09-07 16:05:47.083][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-09-07 16:05:47.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:47.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:47.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:47.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:47.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:47.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:47.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:47.107][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-09-07 16:05:47.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:47.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-09-07 16:05:47.112][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:47.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:47.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:47.116][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:47.117][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:47.118][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:47.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:47.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:47.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:47.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:47.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:47.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:47.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:47.136][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-09-07 16:05:47.139][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:47.140][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:47.142][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-09-07 16:05:47.503][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-09-07 16:05:47.864][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:47.867][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-09-07 16:05:47.872][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-09-07 16:05:47.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-09-07 16:05:47.878][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:47.880][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:47.881][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:47.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:47.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:47.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:47.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:47.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:47.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:47.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:47.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:47.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:47.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:47.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:47.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:47.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:47.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:47.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:47.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:47.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:47.950][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:47.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.954][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.959][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:47.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:47.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:47.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.979][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:47.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:47.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:47.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:47.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:47.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:47.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:48.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:48.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:48.058][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-09-07 16:05:48.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:48.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:48.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:48.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:48.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:48.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:48.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:48.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:48.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:48.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:48.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:48.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:48.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:48.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:48.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:48.117][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-09-07 16:05:48.118][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:48.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-09-07 16:05:48.122][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:48.123][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:48.125][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:48.126][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:48.127][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:48.128][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:48.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:48.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:48.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:48.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:48.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:48.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:48.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:48.145][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-09-07 16:05:48.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:48.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:48.151][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-09-07 16:05:48.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-09-07 16:05:48.887][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:48.890][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-09-07 16:05:49.009][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-09-07 16:05:49.471][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-09-07 16:05:49.876][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:49.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:49.891][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:49.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:49.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:49.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:49.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:49.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:49.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:49.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:49.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:49.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:49.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.913][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.919][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:49.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:49.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:49.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:49.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.933][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:49.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:49.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:49.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:49.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:49.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:49.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.969][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:49.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:49.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:49.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:49.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:49.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:49.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:49.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:50.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:50.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:50.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:50.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.013][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:50.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:50.069][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-09-07 16:05:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:50.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:50.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:50.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:50.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:50.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:50.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:50.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:50.114][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:50.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:50.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:50.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:50.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:50.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:50.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:50.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.141][private$selectFields]
biodb.TRACE[2024-09-07 16:05:50.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:50.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:50.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.150][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.154][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.157][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.163][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.179][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-09-07 16:05:50.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:50.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:50.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:50.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:50.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:50.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:50.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.205][private$selectFields]
biodb.TRACE[2024-09-07 16:05:50.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:50.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:50.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.221][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:50.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:50.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:50.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:50.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:50.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:50.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:50.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.269][private$selectFields]
biodb.TRACE[2024-09-07 16:05:50.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:50.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:50.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.284][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:50.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.289][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:50.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:50.314][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:05:50.315][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:50.317][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:50.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:50.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:50.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:50.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:50.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:50.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:50.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:50.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:50.339][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:50.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:50.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:51.074][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:51.078][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-09-07 16:05:51.083][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-09-07 16:05:51.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:51.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:51.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:51.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:51.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:51.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:51.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:51.101][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-09-07 16:05:51.102][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:51.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-09-07 16:05:51.105][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:51.107][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:51.108][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:51.109][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:51.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:51.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:51.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:51.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:51.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:51.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:51.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:51.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:51.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:51.129][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-09-07 16:05:51.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:51.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:51.135][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-09-07 16:05:51.509][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-09-07 16:05:51.869][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:51.872][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-09-07 16:05:51.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-09-07 16:05:52.954][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-09-07 16:05:52.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:52.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:52.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:52.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:52.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:52.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:52.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:52.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:52.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:52.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:52.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:52.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:52.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:52.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:52.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:52.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:52.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:52.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:52.998][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:53.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:53.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:53.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:53.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:53.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:53.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:53.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:53.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.034][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:53.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:53.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.054][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:53.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:53.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.064][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:53.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:53.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:53.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:53.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:53.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:53.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:53.133][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-09-07 16:05:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:53.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:53.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:53.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:53.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:53.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:53.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:53.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:53.163][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-09-07 16:05:53.164][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:53.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-09-07 16:05:53.168][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:53.169][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:53.170][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:53.172][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:53.173][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:53.174][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:53.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:53.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:53.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:53.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:53.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:53.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:53.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:53.191][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-09-07 16:05:53.194][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:53.196][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:53.197][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-09-07 16:05:53.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-09-07 16:05:53.920][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:53.923][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-09-07 16:05:53.928][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-09-07 16:05:53.931][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-09-07 16:05:53.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:53.935][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:53.937][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:53.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:53.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:53.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:53.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:53.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:53.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:53.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:53.954][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.964][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:53.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:53.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.974][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:53.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:53.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.978][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:53.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:53.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:53.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.000][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:54.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:54.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:54.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:54.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.022][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:54.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:54.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:54.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.052][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:54.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:54.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:54.064][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:54.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:54.122][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-09-07 16:05:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:54.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:54.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:54.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:54.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:54.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:54.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:54.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:54.152][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-09-07 16:05:54.154][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:54.155][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-09-07 16:05:54.157][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:54.159][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:54.160][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:54.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:54.162][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:54.164][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:54.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:54.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:54.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:54.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:54.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:54.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:54.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:54.181][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-09-07 16:05:54.184][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:54.185][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:54.187][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-09-07 16:05:54.549][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-09-07 16:05:54.913][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:54.915][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-09-07 16:05:54.920][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-09-07 16:05:54.926][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-09-07 16:05:56.176][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:56.178][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:56.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:56.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:56.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:56.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:56.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:56.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:56.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:56.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:56.196][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.206][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:56.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:56.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:56.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:56.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:56.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:56.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:56.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:56.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:56.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:56.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.252][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:56.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:56.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.272][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:56.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:56.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:56.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:56.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:56.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:56.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:56.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:56.351][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-09-07 16:05:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:56.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:56.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:56.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:56.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:56.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:56.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:56.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:56.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:56.380][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-09-07 16:05:56.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:56.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-09-07 16:05:56.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:56.396][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:56.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:56.399][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:56.400][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:56.401][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:56.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:56.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:56.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:56.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:56.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:56.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:56.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:56.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-09-07 16:05:56.422][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:56.423][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:56.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-09-07 16:05:56.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-09-07 16:05:57.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:57.168][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-09-07 16:05:57.173][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-09-07 16:05:57.176][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-09-07 16:05:57.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:05:57.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:05:57.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:05:57.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:57.212][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:57.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:05:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:05:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:57.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:57.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:57.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:57.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:05:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:05:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:57.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:57.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:05:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:05:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:57.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:57.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:05:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.262][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:57.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:57.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.266][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:05:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:05:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:57.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:57.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:57.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:57.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.294][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:57.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:57.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.297][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:05:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:05:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.304][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:57.305][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:57.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:05:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:05:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.364][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-09-07 16:05:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.410][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:57.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.437][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.446][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.453][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-09-07 16:05:57.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.503][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-09-07 16:05:57.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.580][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.588][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.593][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.596][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-09-07 16:05:57.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:57.621][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:57.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:57.666][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:57.669][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:57.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:05:57.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:57.675][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:05:57.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:57.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:57.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:05:57.686][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:57.688][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:05:57.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:57.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:57.779][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:57.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.806][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.808][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.819][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.821][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.826][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:05:57.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.871][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.884][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.892][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.893][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:05:57.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.936][private$selectFields]
biodb.TRACE[2024-09-07 16:05:57.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:57.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:57.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.945][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.952][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:57.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.958][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:57.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:05:57.975][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:57.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:57.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:57.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:57.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:57.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:57.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:57.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:57.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:58.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:58.006][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:58.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-09-07 16:05:58.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:58.012][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-09-07 16:05:58.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.100][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:58.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.127][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.136][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.143][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:05:58.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.191][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.207][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:05:58.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.254][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.263][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:05:58.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:58.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:58.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:58.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:58.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:58.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:05:58.318][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:58.320][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:05:58.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:58.409][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:58.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.444][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.446][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.452][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.465][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:05:58.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.508][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.516][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.521][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.523][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-09-07 16:05:58.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:58.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.572][private$selectFields]
biodb.TRACE[2024-09-07 16:05:58.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:58.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:58.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.581][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.588][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:05:58.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.593][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:05:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:58.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:58.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-09-07 16:05:58.611][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:58.612][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:58.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:58.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:58.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:58.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:58.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:58.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:58.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:58.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:05:58.659][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:58.660][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:58.662][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:05:59.025][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:05:59.388][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:05:59.392][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-09-07 16:05:59.398][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-09-07 16:05:59.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:59.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:59.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:59.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:59.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:59.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:59.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:59.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:59.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:59.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:59.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:59.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:59.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:59.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:05:59.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:59.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:59.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:59.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:59.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:59.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:59.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:59.476][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-09-07 16:05:59.477][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:05:59.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-09-07 16:05:59.481][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:05:59.482][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:05:59.484][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:05:59.485][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:05:59.486][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:05:59.488][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:05:59.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:59.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:59.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:59.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:59.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:59.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:59.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:59.505][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-09-07 16:05:59.508][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:05:59.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:05:59.511][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-09-07 16:05:59.871][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-09-07 16:06:00.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:00.236][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-09-07 16:06:00.241][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-09-07 16:06:00.245][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-09-07 16:06:00.248][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:00.249][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:00.251][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:00.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:00.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:00.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:00.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:00.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:00.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:00.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:00.268][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.271][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.278][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:00.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:00.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.281][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.288][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:00.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:00.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.291][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:00.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:00.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:00.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:00.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:00.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:00.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.323][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:00.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.339][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:00.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:00.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.343][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:00.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:00.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.363][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:00.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:00.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.373][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:00.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:00.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:00.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:00.438][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-09-07 16:06:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:00.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:00.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:00.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:00.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:00.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:00.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:00.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:00.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:00.468][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-09-07 16:06:00.470][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:00.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-09-07 16:06:00.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:00.475][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:00.476][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:00.477][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:00.479][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:00.480][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:00.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:00.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:00.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:00.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:00.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:00.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:00.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:00.497][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-09-07 16:06:00.500][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:00.501][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:00.503][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-09-07 16:06:00.871][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-09-07 16:06:01.231][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:01.234][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-09-07 16:06:01.238][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-09-07 16:06:01.242][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-09-07 16:06:01.245][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:01.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:01.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:01.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:01.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:01.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:01.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:01.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:01.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:01.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:01.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.275][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:01.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:01.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:01.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.285][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:01.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:01.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.289][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:01.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:01.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:01.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:01.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.309][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:01.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.326][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:01.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.340][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.346][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:01.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:01.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.357][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:01.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:01.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:01.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:01.368][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:01.426][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-09-07 16:06:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:01.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:01.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:01.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:01.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:01.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:01.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:01.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:01.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:01.466][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-09-07 16:06:01.467][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:01.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-09-07 16:06:01.471][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:01.472][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:01.474][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:01.475][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:01.476][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:01.477][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:01.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:01.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:01.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:01.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:01.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:01.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:01.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:01.495][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-09-07 16:06:01.498][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:01.499][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:01.501][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-09-07 16:06:01.861][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-09-07 16:06:02.220][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:02.223][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-09-07 16:06:02.228][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-09-07 16:06:02.232][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-09-07 16:06:02.235][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:02.236][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:02.238][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:02.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:02.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:02.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:02.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:02.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:02.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:02.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:02.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.259][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.265][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:02.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:02.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.276][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:02.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:02.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:02.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:02.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.290][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:02.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:02.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.300][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:02.308][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:02.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.316][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:02.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:02.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.337][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:02.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:02.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.347][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:02.349][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:02.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.351][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.357][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:02.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:02.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:02.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:02.417][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-09-07 16:06:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:02.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:02.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:02.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:02.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:02.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:02.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:02.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:02.447][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-09-07 16:06:02.448][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:02.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-09-07 16:06:02.452][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:02.453][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:02.454][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:02.456][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:02.457][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:02.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:02.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:02.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:02.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:02.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:02.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:02.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:02.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:02.476][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-09-07 16:06:02.479][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:02.480][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:02.482][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-09-07 16:06:02.844][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-09-07 16:06:03.217][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:03.219][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-09-07 16:06:03.224][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-09-07 16:06:03.228][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-09-07 16:06:03.231][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:03.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:03.234][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:03.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:03.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:03.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:03.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:03.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:03.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:03.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:03.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:03.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:03.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:03.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:03.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:03.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:03.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.292][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:03.293][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:03.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:03.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:03.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:03.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.306][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.313][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:03.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:03.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.316][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.345][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:03.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:03.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.349][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:03.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.356][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:03.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:03.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:03.368][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:03.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:03.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:03.426][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-09-07 16:06:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:03.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:03.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:03.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:03.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:03.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:03.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:03.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:03.457][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-09-07 16:06:03.458][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:03.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-09-07 16:06:03.462][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:03.463][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:03.465][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:03.466][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:03.467][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:03.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:03.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:03.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:03.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:03.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:03.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:03.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:03.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:03.486][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-09-07 16:06:03.489][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:03.491][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:03.492][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-09-07 16:06:03.851][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-09-07 16:06:04.217][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:04.220][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-09-07 16:06:04.224][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-09-07 16:06:04.228][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-09-07 16:06:04.231][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:04.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:04.234][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:04.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:04.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:04.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:04.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.271][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:04.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:04.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:04.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:04.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:04.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:04.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:04.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:04.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:04.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:04.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.306][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:04.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:04.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:04.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:04.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:04.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:04.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:04.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:04.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:04.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.340][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:04.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:04.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:04.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:04.405][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-09-07 16:06:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:04.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:04.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:04.450][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:04.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.487][private$selectFields]
biodb.TRACE[2024-09-07 16:06:04.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:04.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:04.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.500][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:06:04.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.551][private$selectFields]
biodb.TRACE[2024-09-07 16:06:04.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:04.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:04.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:04.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:06:04.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.617][private$selectFields]
biodb.TRACE[2024-09-07 16:06:04.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:04.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:04.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.630][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.633][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:04.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.638][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.639][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:04.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:04.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:06:04.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:04.657][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:04.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:04.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:04.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:04.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:04.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:04.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:04.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:04.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:04.680][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:04.682][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:04.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-09-07 16:06:05.055][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-09-07 16:06:05.592][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:05.595][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-09-07 16:06:05.600][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-09-07 16:06:05.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:05.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:05.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:05.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:05.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:05.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:05.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:05.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:05.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:05.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:05.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:05.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:05.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:05.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:05.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:05.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:05.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:05.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:05.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:05.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:05.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:05.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:05.682][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-09-07 16:06:05.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:05.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-09-07 16:06:05.687][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:05.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:05.690][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:05.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:05.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:05.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:05.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:05.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:05.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:05.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:05.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:05.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:05.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:05.711][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-09-07 16:06:05.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:05.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:05.717][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-09-07 16:06:06.077][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-09-07 16:06:06.441][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:06.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-09-07 16:06:06.449][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-09-07 16:06:06.453][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-09-07 16:06:06.457][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:06.459][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:06.460][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:06.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:06.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:06.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:06.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:06.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:06.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:06.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:06.477][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.487][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:06.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:06.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.491][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.498][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:06.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:06.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.501][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:06.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:06.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:06.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:06.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:06.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.521][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.538][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:06.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:06.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.544][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:06.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:06.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:06.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.558][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:06.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:06.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:06.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:06.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.578][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:06.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:06.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:06.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:06.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:06.644][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-09-07 16:06:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:06.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:06.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:06.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:06.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:06.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:06.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:06.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:06.675][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-09-07 16:06:06.676][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:06.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-09-07 16:06:06.679][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:06.681][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:06.682][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:06.683][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:06.685][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:06.686][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:06.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:06.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:06.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:06.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:06.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:06.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:06.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:06.703][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-09-07 16:06:06.706][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:06.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:06.709][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-09-07 16:06:07.072][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-09-07 16:06:07.436][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:07.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-09-07 16:06:07.444][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-09-07 16:06:07.449][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-09-07 16:06:07.451][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:07.453][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:07.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:07.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:07.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:07.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:07.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:07.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:07.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:07.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:07.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.475][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.482][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:07.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:07.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:07.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:07.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:07.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:07.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:07.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:07.525][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:07.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.527][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.529][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:07.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:07.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:07.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:07.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:07.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:07.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.564][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:07.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:07.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:07.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:07.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:07.631][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-09-07 16:06:07.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:07.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:07.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:07.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:07.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:07.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:07.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:07.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:07.662][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-09-07 16:06:07.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:07.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-09-07 16:06:07.667][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:07.668][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:07.669][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:07.671][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:07.672][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:07.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:07.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:07.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:07.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:07.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:07.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:07.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:07.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:07.701][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-09-07 16:06:07.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:07.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:07.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-09-07 16:06:08.067][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-09-07 16:06:08.429][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:08.432][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-09-07 16:06:08.438][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-09-07 16:06:08.442][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-09-07 16:06:08.895][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:08.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:08.898][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:08.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:08.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:08.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:08.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:08.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:08.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:08.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:08.915][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:08.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:08.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.926][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:08.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:08.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.936][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:08.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:08.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.939][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:08.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:08.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:08.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:08.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:08.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:08.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:08.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.972][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:08.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:08.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:08.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:08.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:08.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:08.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:08.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.992][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:08.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:08.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:08.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:09.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:09.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:09.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:09.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:09.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:09.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:09.074][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-09-07 16:06:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:09.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:09.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:09.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:09.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:09.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:09.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:09.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:09.105][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-09-07 16:06:09.106][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:09.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-09-07 16:06:09.110][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:09.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:09.113][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:09.114][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:09.115][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:09.116][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:09.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:09.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:09.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:09.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:09.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:09.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:09.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:09.134][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-09-07 16:06:09.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:09.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:09.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-09-07 16:06:09.504][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-09-07 16:06:09.864][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:09.868][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-09-07 16:06:09.873][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-09-07 16:06:09.877][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-09-07 16:06:09.880][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:09.881][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:09.883][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:09.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:09.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:09.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:09.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:09.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:09.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:09.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:09.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.910][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:09.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:09.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.914][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:09.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:09.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:09.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.934][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:09.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:09.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:09.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:09.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.956][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:09.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:09.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.976][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:09.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:09.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:09.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.990][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:09.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:09.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:09.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.000][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:10.073][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-09-07 16:06:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:10.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:10.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:10.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:10.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:10.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:10.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:10.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:10.103][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-09-07 16:06:10.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:10.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-09-07 16:06:10.108][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:10.109][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:10.110][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:10.112][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:10.113][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:10.114][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:10.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:10.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:10.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:10.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:10.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:10.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:10.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:10.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-09-07 16:06:10.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:10.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:10.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-09-07 16:06:10.501][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-09-07 16:06:10.864][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:10.866][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-09-07 16:06:10.871][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-09-07 16:06:10.875][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-09-07 16:06:10.877][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:10.879][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:10.880][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:10.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:10.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:10.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:10.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:10.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:10.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:10.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:10.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:10.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:10.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:10.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:10.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:10.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:10.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:10.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:10.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:10.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:10.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:10.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.953][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:10.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.956][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:10.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:10.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:10.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:10.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.984][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:10.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:10.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:10.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:10.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:10.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:11.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:11.053][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-09-07 16:06:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:11.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:11.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:11.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:11.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:11.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:11.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:11.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:11.083][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-09-07 16:06:11.084][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:11.086][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-09-07 16:06:11.087][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:11.089][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:11.090][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:11.091][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:11.093][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:11.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:11.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:11.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:11.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:11.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:11.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:11.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:11.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:11.111][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-09-07 16:06:11.114][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:11.115][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:11.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-09-07 16:06:11.478][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-09-07 16:06:11.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:11.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-09-07 16:06:11.859][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-09-07 16:06:11.862][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-09-07 16:06:11.865][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:11.866][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:11.868][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:11.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:11.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:11.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:11.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:11.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:11.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:11.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:11.885][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:11.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.906][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:11.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:11.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.910][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.912][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.917][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:11.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:11.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:11.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.927][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:11.928][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:11.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:11.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:11.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:11.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.953][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:11.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:11.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:11.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:11.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:11.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:11.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.984][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:11.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:11.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:11.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:11.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:11.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:11.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:12.054][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-09-07 16:06:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:12.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:12.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:12.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:12.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:12.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:12.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:12.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:12.084][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-09-07 16:06:12.086][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:12.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-09-07 16:06:12.089][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:12.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:12.092][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:12.093][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:12.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:12.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:12.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:12.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:12.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:12.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:12.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:12.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:12.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:12.114][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-09-07 16:06:12.117][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:12.118][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:12.120][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-09-07 16:06:12.487][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-09-07 16:06:12.850][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:12.853][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-09-07 16:06:12.857][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-09-07 16:06:12.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-09-07 16:06:12.863][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:12.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:12.866][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:12.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:12.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:12.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:12.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:12.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:12.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:12.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:12.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.887][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:12.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.893][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:12.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:12.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.896][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.903][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:12.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:12.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:12.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.917][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:12.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:12.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:12.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:12.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.938][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:12.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:12.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:12.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.958][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:12.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:12.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.968][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:12.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:12.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:12.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:12.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.978][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:12.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:12.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:13.036][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-09-07 16:06:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:13.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:13.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:13.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:13.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:13.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:13.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:13.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:13.078][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-09-07 16:06:13.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:13.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-09-07 16:06:13.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:13.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:13.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:13.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:13.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:13.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:13.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:13.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:13.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:13.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:13.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:13.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:13.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:13.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-09-07 16:06:13.109][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:13.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:13.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-09-07 16:06:13.477][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-09-07 16:06:13.841][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:13.845][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-09-07 16:06:13.850][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-09-07 16:06:13.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-09-07 16:06:13.856][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:13.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:13.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:13.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:13.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:13.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:13.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:13.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:13.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:13.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:13.877][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.887][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:13.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:13.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.891][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:13.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.897][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:13.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:13.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.901][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:13.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:13.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:13.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:13.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:13.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:13.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:13.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.933][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:13.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:13.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.936][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.953][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:13.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:13.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:13.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:13.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:13.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:14.033][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-09-07 16:06:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:14.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:14.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:14.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:14.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:14.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:14.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:14.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:14.063][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-09-07 16:06:14.064][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:14.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-09-07 16:06:14.068][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:14.069][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:14.071][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:14.072][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:14.073][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:14.074][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:14.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:14.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:14.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:14.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:14.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:14.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:14.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:14.092][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-09-07 16:06:14.095][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:14.096][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:14.097][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-09-07 16:06:14.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-09-07 16:06:14.832][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:14.834][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-09-07 16:06:14.839][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-09-07 16:06:14.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-09-07 16:06:16.151][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:16.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:16.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:16.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:16.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:16.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:16.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:16.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:16.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:16.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:16.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.183][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:16.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:16.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:16.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:16.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:16.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:16.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.196][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:16.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:16.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:16.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:16.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:16.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:16.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:16.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.218][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:16.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:16.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.222][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:16.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.249][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:16.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:16.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:16.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:16.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:16.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:16.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:16.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:16.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:16.329][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-09-07 16:06:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:16.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:16.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:16.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:16.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:16.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:16.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:16.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:16.359][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-09-07 16:06:16.360][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:16.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-09-07 16:06:16.364][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:16.365][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:16.366][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:16.368][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:16.369][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:16.370][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:16.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:16.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:16.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:16.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:16.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:16.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:16.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:16.387][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-09-07 16:06:16.390][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:16.392][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:16.393][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-09-07 16:06:16.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-09-07 16:06:17.115][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:17.118][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-09-07 16:06:17.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-09-07 16:06:17.129][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-09-07 16:06:17.132][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:17.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:17.140][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:17.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:17.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:17.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:17.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:17.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:17.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:17.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:17.158][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.168][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:17.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:17.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.178][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:17.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:17.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.182][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:17.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:17.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:17.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:17.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:17.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:17.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:17.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:17.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:17.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:17.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:17.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:17.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:17.303][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-09-07 16:06:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:17.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:17.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:17.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:17.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:17.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:17.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:17.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:17.333][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-09-07 16:06:17.335][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:17.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-09-07 16:06:17.338][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:17.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:17.341][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:17.342][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:17.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:17.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:17.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:17.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:17.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:17.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:17.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:17.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:17.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:17.362][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-09-07 16:06:17.365][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:17.366][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:17.368][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-09-07 16:06:17.730][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-09-07 16:06:18.101][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:18.104][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-09-07 16:06:18.109][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-09-07 16:06:18.112][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-09-07 16:06:18.115][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:18.117][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:18.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:18.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:18.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:18.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:18.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:18.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:18.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:18.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:18.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.157][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:18.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:18.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:18.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:18.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:18.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:18.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.181][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:18.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:18.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:18.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:18.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.203][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:18.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:18.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:18.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:18.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.227][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:18.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:18.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:18.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:18.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:18.304][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-09-07 16:06:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:18.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:18.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:18.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:18.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:18.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:18.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:18.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:18.335][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-09-07 16:06:18.336][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:18.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-09-07 16:06:18.340][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:18.341][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:18.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:18.344][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:18.345][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:18.346][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:18.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:18.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:18.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:18.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:18.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:18.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:18.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:18.363][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-09-07 16:06:18.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:18.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:18.369][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-09-07 16:06:18.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-09-07 16:06:19.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:19.110][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-09-07 16:06:19.115][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-09-07 16:06:19.119][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-09-07 16:06:19.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:19.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:19.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:19.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:19.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:19.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:19.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:19.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:19.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:19.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:19.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.152][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:19.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:19.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.162][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:19.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:19.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:19.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:19.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:19.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:19.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:19.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:19.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:19.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:19.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:19.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.196][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.198][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:19.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:19.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.218][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:19.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:19.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:19.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.228][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:19.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:19.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:19.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:19.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:19.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:19.308][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-09-07 16:06:19.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:19.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:19.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:19.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:19.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:19.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:19.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:19.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:19.338][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-09-07 16:06:19.339][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:19.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-09-07 16:06:19.342][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:19.344][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:19.345][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:19.346][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:19.348][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:19.349][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:19.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:19.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:19.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:19.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:19.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:19.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:19.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:19.366][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-09-07 16:06:19.369][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:19.370][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:19.372][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-09-07 16:06:19.741][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-09-07 16:06:20.103][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:20.106][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-09-07 16:06:20.111][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-09-07 16:06:20.114][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-09-07 16:06:20.117][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:20.118][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:20.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:20.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:20.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:20.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:20.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:20.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:20.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:20.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:20.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.147][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:20.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:20.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:20.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:20.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:20.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.181][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:20.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:20.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.193][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:20.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:20.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.196][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.213][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:20.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:20.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:20.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:20.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:20.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:20.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:20.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:20.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:20.296][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-09-07 16:06:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:20.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:20.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:20.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:20.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:20.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:20.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:20.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:20.327][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-09-07 16:06:20.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:20.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-09-07 16:06:20.332][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:20.333][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:20.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:20.336][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:20.337][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:20.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:20.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:20.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:20.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:20.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:20.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:20.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:20.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:20.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-09-07 16:06:20.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:20.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:20.362][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-09-07 16:06:20.723][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-09-07 16:06:21.083][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:21.086][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-09-07 16:06:21.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-09-07 16:06:21.095][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-09-07 16:06:21.098][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:21.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:21.101][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:21.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:21.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:21.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:21.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:21.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:21.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:21.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:21.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.129][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:21.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:21.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:21.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:21.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:21.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:21.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:21.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:21.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:21.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:21.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:21.181][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:21.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.185][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:21.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:21.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:21.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:21.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:21.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:21.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.209][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:21.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:21.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.219][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:21.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:21.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:21.285][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-09-07 16:06:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:21.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:21.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:21.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:21.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:21.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:21.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:21.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:21.315][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-09-07 16:06:21.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:21.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-09-07 16:06:21.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:21.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:21.323][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:21.324][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:21.326][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:21.327][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:21.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:21.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:21.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:21.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:21.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:21.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:21.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:21.344][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-09-07 16:06:21.347][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:21.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:21.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-09-07 16:06:21.711][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-09-07 16:06:22.072][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:22.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-09-07 16:06:22.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-09-07 16:06:22.083][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-09-07 16:06:22.086][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:22.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:22.089][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:22.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:22.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:22.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:22.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:22.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:22.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:22.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:22.106][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.110][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.117][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:22.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:22.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.127][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:22.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:22.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:22.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:22.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:22.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:22.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:22.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:22.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:22.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.162][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:22.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:22.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:22.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:22.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:22.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:22.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:22.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:22.263][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-09-07 16:06:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:22.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:22.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:22.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:22.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:22.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:22.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:22.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:22.293][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-09-07 16:06:22.294][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:22.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-09-07 16:06:22.298][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:22.308][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:22.310][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:22.311][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:22.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:22.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:22.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:22.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:22.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:22.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:22.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:22.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:22.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:22.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-09-07 16:06:22.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:22.336][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:22.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-09-07 16:06:22.699][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-09-07 16:06:23.066][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:23.069][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-09-07 16:06:23.073][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-09-07 16:06:23.077][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-09-07 16:06:23.079][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:23.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:23.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:23.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:23.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:23.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:23.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:23.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:23.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:23.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:23.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.109][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:23.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:23.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.113][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:23.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:23.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:23.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:23.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.133][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:23.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:23.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.143][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:23.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:23.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.155][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:23.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:23.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.169][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.175][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:23.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:23.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:23.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:23.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:23.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:23.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:23.255][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-09-07 16:06:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:23.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:23.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:23.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:23.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:23.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:23.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:23.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:23.286][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-09-07 16:06:23.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:23.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-09-07 16:06:23.291][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:23.293][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:23.294][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:23.295][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:23.297][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:23.298][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:23.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:23.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:23.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:23.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:23.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:23.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:23.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:23.315][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-09-07 16:06:23.319][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:23.320][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:23.321][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-09-07 16:06:23.698][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-09-07 16:06:24.073][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:24.076][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-09-07 16:06:24.082][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-09-07 16:06:24.085][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-09-07 16:06:24.088][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:24.089][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:24.091][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:24.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:24.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:24.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:24.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:24.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:24.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:24.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:24.108][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.112][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.118][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:24.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:24.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.122][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:24.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:24.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:24.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:24.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:24.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:24.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:24.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:24.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:24.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.164][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:24.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:24.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:24.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.184][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:24.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:24.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.195][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:24.196][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:24.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:24.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:24.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:24.276][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-09-07 16:06:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:24.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:24.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:24.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:24.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:24.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:24.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:24.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:24.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:24.306][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-09-07 16:06:24.307][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:24.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-09-07 16:06:24.311][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:24.312][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:24.314][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:24.315][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:24.316][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:24.317][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:24.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:24.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:24.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:24.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:24.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:24.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:24.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:24.335][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-09-07 16:06:24.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:24.339][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:24.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-09-07 16:06:24.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-09-07 16:06:25.077][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:25.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-09-07 16:06:25.085][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-09-07 16:06:25.089][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-09-07 16:06:25.092][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:25.093][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:25.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:25.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:25.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:25.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:25.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:25.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:25.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:25.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:25.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.122][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:25.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:25.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.125][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:25.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:25.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:25.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:25.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:25.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:25.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:25.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:25.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:25.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:25.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.167][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:25.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:25.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.181][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:25.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:25.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:25.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:25.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:25.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.201][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:25.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:25.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:25.267][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-09-07 16:06:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:25.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:25.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:25.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:25.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:25.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:25.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:25.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:25.297][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-09-07 16:06:25.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:25.300][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-09-07 16:06:25.301][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:25.303][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:25.304][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:25.305][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:25.307][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:25.308][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:25.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:25.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:25.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:25.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:25.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:25.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:25.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:25.325][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-09-07 16:06:25.328][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:25.329][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:25.331][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-09-07 16:06:25.695][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-09-07 16:06:26.138][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:26.141][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-09-07 16:06:26.146][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-09-07 16:06:26.150][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-09-07 16:06:26.152][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:26.154][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:26.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:26.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:26.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:26.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:26.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:26.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:26.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:26.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:26.184][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.194][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:26.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.205][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:26.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:26.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.208][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:26.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:26.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:26.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:26.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:26.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.240][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:26.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:26.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.260][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:26.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:26.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:26.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:26.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:26.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:26.341][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-09-07 16:06:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:26.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:26.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:26.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:26.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:26.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:26.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:26.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:26.371][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-09-07 16:06:26.372][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:26.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-09-07 16:06:26.376][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:26.377][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:26.378][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:26.380][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:26.381][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:26.382][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:26.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:26.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:26.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:26.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:26.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:26.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:26.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:26.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-09-07 16:06:26.403][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:26.404][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:26.405][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-09-07 16:06:26.775][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-09-07 16:06:27.139][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:27.142][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-09-07 16:06:27.147][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-09-07 16:06:27.151][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-09-07 16:06:27.153][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:27.155][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:27.156][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:27.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:27.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:27.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:27.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:27.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:27.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:27.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:27.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.177][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.183][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:27.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:27.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:27.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:27.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:27.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:27.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:27.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:27.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:27.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:27.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.227][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.229][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:27.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.249][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:27.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:27.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.259][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:27.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:27.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:27.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:27.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:27.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:27.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:27.340][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-09-07 16:06:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:27.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:27.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:27.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:27.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:27.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:27.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:27.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:27.372][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-09-07 16:06:27.373][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:27.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-09-07 16:06:27.376][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:27.378][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:27.379][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:27.380][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:27.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:27.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:27.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:27.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:27.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:27.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:27.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:27.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:27.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:27.400][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-09-07 16:06:27.403][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:27.404][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:27.406][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-09-07 16:06:27.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-09-07 16:06:28.129][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:28.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-09-07 16:06:28.136][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-09-07 16:06:28.140][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-09-07 16:06:28.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:28.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:28.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:28.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:28.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:28.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:28.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:28.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:28.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:28.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:28.163][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.173][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:28.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:28.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.177][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.184][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:28.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:28.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:28.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:28.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:28.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:28.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.208][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:28.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:28.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:28.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.218][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.219][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:28.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:28.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.223][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.233][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:28.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:28.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:28.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:28.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:28.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:28.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.263][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:28.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:28.319][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-09-07 16:06:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:28.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:28.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:28.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:28.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:28.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:28.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:28.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:28.349][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-09-07 16:06:28.350][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:28.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-09-07 16:06:28.354][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:28.355][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:28.357][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:28.358][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:28.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:28.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:28.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:28.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:28.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:28.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:28.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:28.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:28.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:28.379][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-09-07 16:06:28.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:28.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:28.385][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-09-07 16:06:28.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-09-07 16:06:29.121][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:29.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-09-07 16:06:29.128][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-09-07 16:06:29.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-09-07 16:06:29.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:29.136][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:29.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:29.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:29.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:29.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:29.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:29.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:29.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:29.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:29.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.164][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:29.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.175][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:29.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:29.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:29.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:29.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:29.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:29.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.209][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:29.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:29.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.220][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.221][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:29.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:29.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.225][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:29.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:29.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:29.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:29.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.252][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:29.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:29.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:29.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:29.321][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-09-07 16:06:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:29.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:29.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:29.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:29.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:29.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:29.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:29.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:29.351][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-09-07 16:06:29.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:29.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-09-07 16:06:29.356][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:29.358][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:29.359][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:29.360][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:29.361][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:29.363][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:29.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:29.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:29.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:29.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:29.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:29.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:29.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:29.379][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-09-07 16:06:29.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:29.384][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:29.385][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-09-07 16:06:29.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-09-07 16:06:30.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:30.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-09-07 16:06:30.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-09-07 16:06:30.136][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-09-07 16:06:30.139][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:30.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:30.142][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:30.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:30.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:30.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:30.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:30.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:30.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:30.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:30.159][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.163][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.170][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:30.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:30.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.180][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:30.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:30.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:30.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:30.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.204][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:30.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:30.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.216][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:30.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:30.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.219][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.229][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.236][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:30.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:30.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.246][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:30.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:30.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:30.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:30.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:30.317][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-09-07 16:06:30.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:30.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:30.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:30.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:30.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:30.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:30.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:30.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:30.347][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-09-07 16:06:30.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:30.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-09-07 16:06:30.352][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:30.363][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:30.364][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:30.366][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:30.368][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:30.369][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:30.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:30.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:30.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:30.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:30.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:30.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:30.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:30.386][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-09-07 16:06:30.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:30.391][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:30.392][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-09-07 16:06:30.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-09-07 16:06:31.137][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:31.140][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-09-07 16:06:31.145][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-09-07 16:06:31.148][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-09-07 16:06:31.151][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:31.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:31.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:31.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:31.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:31.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:31.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:31.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:31.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:31.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:31.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.182][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:31.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:31.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.192][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:31.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:31.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.196][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:31.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:31.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:31.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:31.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:31.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:31.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.228][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:31.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.233][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:31.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.248][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:31.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:31.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.258][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:31.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:31.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:31.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:31.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:31.328][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-09-07 16:06:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:31.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:31.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:31.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:31.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:31.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:31.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:31.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:31.358][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-09-07 16:06:31.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:31.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-09-07 16:06:31.363][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:31.364][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:31.366][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:31.367][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:31.368][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:31.369][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:31.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:31.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:31.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:31.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:31.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:31.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:31.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:31.387][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-09-07 16:06:31.390][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:31.391][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:31.393][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-09-07 16:06:31.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-09-07 16:06:32.120][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:32.123][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-09-07 16:06:32.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-09-07 16:06:32.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-09-07 16:06:32.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:32.135][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:32.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:32.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:32.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:32.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:32.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:32.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:32.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:32.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:32.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.157][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.164][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:32.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:32.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.174][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:32.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.177][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:32.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.187][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:32.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:32.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:32.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.214][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:32.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.227][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:32.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:32.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.237][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.255][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:32.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.259][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.266][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:32.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:32.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:32.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:32.325][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-09-07 16:06:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:32.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:32.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:32.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:32.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:32.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:32.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:32.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:32.355][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-09-07 16:06:32.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:06:32.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-09-07 16:06:32.360][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-09-07 16:06:32.362][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-09-07 16:06:32.363][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:06:32.364][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-09-07 16:06:32.365][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-09-07 16:06:32.367][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-09-07 16:06:32.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:32.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:32.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:32.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:32.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:32.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:32.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:32.384][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-09-07 16:06:32.387][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:06:32.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:06:32.390][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-09-07 16:06:32.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-09-07 16:06:33.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:06:33.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-09-07 16:06:33.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-09-07 16:06:34.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-09-07 16:06:34.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-09-07 16:06:34.890][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:06:34.891][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-09-07 16:06:34.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:34.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:34.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:34.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:34.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:34.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:34.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:34.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:34.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.918][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:34.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:34.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.928][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:34.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:34.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:34.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:34.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:34.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:34.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:34.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:34.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.964][ef$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:34.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:34.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-09-07 16:06:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:34.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:34.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:34.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:34.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:34.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:34.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-09-07 16:06:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:35.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:35.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:35.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.062][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-09-07 16:06:35.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:35.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.172][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.173][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.194][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:06:35.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.236][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.249][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.251][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.273][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:06:35.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.300][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.313][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.316][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.322][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:06:35.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:35.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:35.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:35.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:35.361][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:35.363][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-09-07 16:06:35.365][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:35.368][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-09-07 16:06:35.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:35.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.518][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.527][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:06:35.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.592][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.630][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:06:35.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.657][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.673][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.678][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.679][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:06:35.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:35.698][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:35.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:35.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:35.745][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:35.746][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-09-07 16:06:35.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:35.751][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-09-07 16:06:35.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:35.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:35.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:35.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:35.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:35.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:35.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:35.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:35.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:35.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:35.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.988][private$selectFields]
biodb.TRACE[2024-09-07 16:06:35.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:35.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:35.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:35.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:35.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.019][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:06:36.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.064][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.080][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.086][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:06:36.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.129][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.144][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.150][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-09-07 16:06:36.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:36.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:36.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:36.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:36.190][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:36.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-09-07 16:06:36.193][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:36.196][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-09-07 16:06:36.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.319][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:36.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.346][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.354][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.366][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-09-07 16:06:36.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.410][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.427][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.435][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.441][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:06:36.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.484][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.497][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.506][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-09-07 16:06:36.524][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:36.525][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:36.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:36.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:36.547][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:36.548][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-09-07 16:06:36.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:36.552][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-09-07 16:06:36.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:36.700][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:36.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.727][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.742][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-09-07 16:06:36.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.793][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.801][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.809][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.815][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-09-07 16:06:36.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.867][private$selectFields]
biodb.TRACE[2024-09-07 16:06:36.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:36.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:36.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.875][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.882][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:36.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.887][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.888][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-09-07 16:06:36.906][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:36.907][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:36.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:36.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:36.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:36.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:06:36.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:36.959][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:06:36.962][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:36.965][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:36.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:06:36.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:36.971][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:06:36.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:36.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:36.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:36.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:36.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:36.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:36.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:36.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:37.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.090][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.106][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.111][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.112][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:06:37.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.157][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.179][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:06:37.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.223][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.232][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.237][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.239][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.245][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:06:37.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:37.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:37.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:37.292][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:37.296][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:37.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-09-07 16:06:37.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:37.302][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-09-07 16:06:37.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.391][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:37.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.420][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.436][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:06:37.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.486][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.509][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:06:37.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.552][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:06:37.592][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:37.593][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:37.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:37.611][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:37.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:37.616][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:06:37.618][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:37.620][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:06:37.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:37.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:37.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.748][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.768][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.769][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:06:37.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.812][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.826][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.833][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.834][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-09-07 16:06:37.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.877][private$selectFields]
biodb.TRACE[2024-09-07 16:06:37.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:37.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:37.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.885][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:37.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.898][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.899][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-09-07 16:06:37.916][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:37.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:37.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:37.961][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:37.964][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:37.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-09-07 16:06:37.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:37.970][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-09-07 16:06:37.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:37.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:37.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:37.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:37.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:37.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:37.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.403][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:38.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.429][private$selectFields]
biodb.TRACE[2024-09-07 16:06:38.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:38.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:38.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.445][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-09-07 16:06:38.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.493][private$selectFields]
biodb.TRACE[2024-09-07 16:06:38.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:38.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:38.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.501][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.514][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-09-07 16:06:38.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.557][private$selectFields]
biodb.TRACE[2024-09-07 16:06:38.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:38.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:38.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:38.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-09-07 16:06:38.596][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:38.597][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:38.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:38.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:38.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:38.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-09-07 16:06:38.622][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:38.625][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-09-07 16:06:38.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:38.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:38.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:38.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:38.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:38.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:38.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:38.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:38.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.502][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:39.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.528][private$selectFields]
biodb.TRACE[2024-09-07 16:06:39.530][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:39.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:39.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.537][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.541][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.544][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.550][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-09-07 16:06:39.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.592][private$selectFields]
biodb.TRACE[2024-09-07 16:06:39.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:39.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:39.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.630][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-09-07 16:06:39.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.662][private$selectFields]
biodb.TRACE[2024-09-07 16:06:39.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:39.664][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:39.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.677][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.683][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:39.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-09-07 16:06:39.700][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:39.701][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:39.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:39.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:39.722][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:39.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-09-07 16:06:39.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:39.728][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-09-07 16:06:39.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:39.847][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:39.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.874][private$selectFields]
biodb.TRACE[2024-09-07 16:06:39.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:39.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:39.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.882][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.887][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.890][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.894][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.896][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-09-07 16:06:39.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.938][private$selectFields]
biodb.TRACE[2024-09-07 16:06:39.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:39.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:39.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:39.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.960][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:39.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-09-07 16:06:39.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:39.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:39.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:39.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:39.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:39.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:39.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:40.002][private$selectFields]
biodb.TRACE[2024-09-07 16:06:40.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:40.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:40.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:40.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:40.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-09-07 16:06:40.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-09-07 16:06:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-09-07 16:06:40.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:40.042][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:06:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.077][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:06:40.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:06:40.092][biodb::testThat]
biodb.INFO [2024-09-07 16:06:40.094][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-09-07 16:06:40.095][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:06:40.096][biodb::testThat]
biodb.TRACE[2024-09-07 16:06:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.109][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:06:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:40.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:40.191][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:40.194][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:40.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:06:40.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:40.200][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:06:40.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:40.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:40.236][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:40.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:06:40.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:40.241][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:06:40.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:40.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:40.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:40.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.432][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:40.433][private$selectFields]
biodb.TRACE[2024-09-07 16:06:40.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:40.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:40.436][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:40.438][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.441][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.442][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.446][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.451][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.452][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.460][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.466][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.470][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.471][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.475][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.484][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.485][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.489][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.495][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.499][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.500][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.504][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.515][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.516][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.523][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.537][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.548][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.557][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:40.558][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:40.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.563][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.564][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.587][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.588][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.599][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.612][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-09-07 16:06:40.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:40.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:40.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:40.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:40.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:40.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:40.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.913][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:40.914][private$selectFields]
biodb.TRACE[2024-09-07 16:06:40.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:40.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:40.917][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:40.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.928][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.936][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:40.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.953][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:40.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.955][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:40.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:40.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.965][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:40.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.970][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:40.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:40.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.975][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:40.976][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:40.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.978][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.979][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:40.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:40.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:40.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:40.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.993][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:40.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:40.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:40.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:40.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:40.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.021][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.035][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:41.036][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:41.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.042][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.052][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.070][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.079][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.084][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.094][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-09-07 16:06:41.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.411][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:41.412][private$selectFields]
biodb.TRACE[2024-09-07 16:06:41.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:41.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:41.415][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:41.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.420][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.421][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.431][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.434][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.439][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.450][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.459][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.464][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.478][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.487][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.491][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.500][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:41.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.505][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.506][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.510][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.514][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.516][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.519][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.520][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.524][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.529][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.530][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:41.531][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:41.533][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.537][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.541][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.547][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.550][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.555][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.560][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.561][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.569][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.570][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.575][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.584][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.585][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:41.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:41.758][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:41.759][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:41.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:41.778][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:41.781][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:41.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:06:41.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:41.787][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:06:41.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:41.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:41.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:41.850][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:41.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:06:41.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:41.855][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:06:41.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:41.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:41.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:41.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:41.942][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:41.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:41.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:41.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:41.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:41.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:41.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:41.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.074][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.075][private$selectFields]
biodb.TRACE[2024-09-07 16:06:42.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:42.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:42.078][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.079][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.084][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.094][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.112][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.113][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.127][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.131][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.141][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.150][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.186][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.201][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.202][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.203][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.208][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.218][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.222][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.233][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.236][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.251][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.261][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:42.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:42.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:42.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:42.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:42.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:42.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:42.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.581][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.582][private$selectFields]
biodb.TRACE[2024-09-07 16:06:42.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:42.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:42.585][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.586][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.591][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.600][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.618][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.619][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.628][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.629][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.632][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.648][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.656][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.657][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.661][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.679][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.684][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.685][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.689][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.690][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.694][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.698][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.700][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.701][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:42.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.707][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.708][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.710][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.716][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.724][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.743][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.745][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.748][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.749][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.758][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.759][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:42.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:42.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:42.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:42.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:42.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:42.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:42.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:42.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:42.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:42.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.076][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:43.077][private$selectFields]
biodb.TRACE[2024-09-07 16:06:43.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:43.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:43.080][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:43.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.086][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.094][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.096][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.124][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.128][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.129][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.133][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.139][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.143][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.157][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.166][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.171][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.180][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.182][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.185][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.186][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.190][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.195][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.196][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:43.197][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:43.198][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.212][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.225][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.236][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.249][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.250][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:43.422][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:43.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:43.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:43.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:43.445][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:43.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-09-07 16:06:43.448][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:43.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-09-07 16:06:43.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:43.686][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:43.688][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:06:43.689][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:43.691][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:06:43.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:43.780][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:43.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:43.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:43.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:43.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:43.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:43.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:43.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.916][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:43.917][private$selectFields]
biodb.TRACE[2024-09-07 16:06:43.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:43.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:43.920][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:43.921][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.925][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.926][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.930][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.934][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.939][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:43.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.948][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.968][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:43.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:43.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:43.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.983][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:43.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.992][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:43.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:43.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:43.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:43.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:43.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.005][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.011][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.021][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.025][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.035][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.036][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.042][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.051][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.070][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.080][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.094][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-09-07 16:06:44.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:44.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:44.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:44.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:44.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:44.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:44.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.412][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.413][private$selectFields]
biodb.TRACE[2024-09-07 16:06:44.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:44.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:44.417][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.418][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.423][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.432][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.436][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.465][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.474][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.479][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.483][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.502][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.512][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.514][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.517][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.518][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.519][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.521][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.526][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.531][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.532][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:44.533][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:44.535][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.538][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.539][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.549][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.552][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.562][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.573][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.581][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.587][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-09-07 16:06:44.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:44.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:44.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:44.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:44.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:44.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:44.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.890][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.892][private$selectFields]
biodb.TRACE[2024-09-07 16:06:44.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:44.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:44.895][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:44.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.901][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.902][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.905][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.909][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.914][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.928][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.933][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.938][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.944][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:44.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:44.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.948][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:44.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.954][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:44.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.958][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:44.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:44.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:44.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.967][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.968][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:44.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:44.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:44.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:44.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:44.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:44.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:44.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:44.997][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:44.998][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.002][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.017][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:45.018][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:45.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.024][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.032][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.038][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.042][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.048][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.057][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.061][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.062][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.070][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.071][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:45.240][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:45.241][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:45.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:45.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:45.269][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:45.270][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-09-07 16:06:45.272][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:45.274][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-09-07 16:06:45.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:45.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:45.309][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:45.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-09-07 16:06:45.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:45.314][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-09-07 16:06:45.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:45.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:45.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:45.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:45.375][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:45.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.519][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:45.520][private$selectFields]
biodb.TRACE[2024-09-07 16:06:45.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:45.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:45.524][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:45.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.530][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.533][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.538][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.539][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.552][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.553][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.554][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.557][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.567][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.572][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.581][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.582][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.586][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.591][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.600][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.618][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.619][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.623][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.628][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.629][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.632][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.634][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.642][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.643][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.644][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:45.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.647][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.648][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:45.649][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:45.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.655][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.656][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.658][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.663][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.688][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.689][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.691][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.696][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.702][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:45.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-09-07 16:06:45.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:45.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:45.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:45.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:45.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:45.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:45.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.012][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.013][private$selectFields]
biodb.TRACE[2024-09-07 16:06:46.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:46.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:46.017][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.023][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.036][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.041][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.050][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.051][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.061][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.065][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.075][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.076][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.084][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.086][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.094][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.102][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.111][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.113][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.116][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.121][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.127][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.136][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.137][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.141][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.142][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.143][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.148][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.184][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.185][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.189][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.200][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-09-07 16:06:46.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:46.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:46.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:46.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:46.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:46.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:46.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:46.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.524][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.525][private$selectFields]
biodb.TRACE[2024-09-07 16:06:46.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:46.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:46.529][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:46.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.534][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.535][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.536][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.543][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.545][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.548][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.553][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.558][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.562][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.572][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.573][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.586][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.588][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.589][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.592][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.597][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.598][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.600][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.605][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.606][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.615][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:46.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.629][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.630][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.639][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.640][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.643][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.644][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.649][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.650][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.652][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.654][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.655][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:46.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.657][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.658][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:46.659][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:46.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.664][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.665][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.674][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.675][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.678][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.683][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.688][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.692][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.697][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.698][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.702][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.713][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:46.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:46.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:46.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:46.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:46.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:46.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:46.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:46.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:46.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:46.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:46.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:46.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:46.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-09-07 16:06:46.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:46.914][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-09-07 16:06:46.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:46.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:46.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:46.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:46.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:46.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:46.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:46.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:46.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:46.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:46.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:46.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:46.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:46.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:46.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:46.978][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:46.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-09-07 16:06:46.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:46.983][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-09-07 16:06:46.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:46.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:46.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:46.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:46.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:46.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:46.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:47.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:47.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:47.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:47.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:47.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:47.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:47.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:47.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:47.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:47.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:47.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:47.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:47.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:47.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:47.081][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:47.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:47.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:47.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:47.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:47.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:47.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:47.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.220][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.222][private$selectFields]
biodb.TRACE[2024-09-07 16:06:47.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:47.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:47.225][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.231][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.249][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.254][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.258][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.263][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.268][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.269][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.274][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.282][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.283][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.285][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.288][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.293][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.302][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.306][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.311][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.321][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.323][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.331][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.344][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.345][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.346][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.349][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.350][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.351][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.352][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.356][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.357][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.365][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.366][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.379][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.384][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.398][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.399][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.408][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:47.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:47.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:47.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:47.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:47.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:47.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:47.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:47.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.737][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.738][private$selectFields]
biodb.TRACE[2024-09-07 16:06:47.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:47.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:47.742][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.743][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.747][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.780][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.797][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.800][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.802][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.810][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.823][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.837][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.842][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.848][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.867][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.868][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.869][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:47.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.873][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.874][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:47.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.880][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.888][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.889][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.893][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.902][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:47.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.908][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:47.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.917][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:47.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.922][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:47.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:47.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:47.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.932][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:48.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.255][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:48.256][private$selectFields]
biodb.TRACE[2024-09-07 16:06:48.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:48.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:48.266][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:48.267][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.271][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.272][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.280][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.281][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.285][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.289][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.294][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.303][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.309][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.313][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.317][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.322][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.323][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.325][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.328][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.332][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.333][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.342][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.346][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.350][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.355][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:48.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.360][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.361][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.364][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.369][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.370][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.374][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.375][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.378][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.384][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.386][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:48.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.389][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:48.390][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:48.392][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.396][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.400][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.406][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.418][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.420][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.429][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.434][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.437][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.442][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.443][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:48.611][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:48.612][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:48.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:48.631][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:48.634][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:48.636][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-09-07 16:06:48.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:48.640][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-09-07 16:06:48.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:48.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:48.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-09-07 16:06:48.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:48.883][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-09-07 16:06:48.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:48.971][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:48.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:48.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:48.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:48.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:48.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:48.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:48.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:48.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:48.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.049][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.118][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.119][private$selectFields]
biodb.TRACE[2024-09-07 16:06:49.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:49.121][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:49.122][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.127][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.128][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.138][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.167][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.169][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.170][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.180][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.181][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.189][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.199][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.225][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.227][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.231][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.239][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.241][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.242][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.244][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.245][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.246][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.248][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.251][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.252][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.256][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.261][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.262][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.270][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.275][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.280][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.284][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.289][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.294][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.295][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.298][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.303][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.304][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-09-07 16:06:49.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:49.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:49.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:49.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:49.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:49.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:49.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.634][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.635][private$selectFields]
biodb.TRACE[2024-09-07 16:06:49.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:49.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:49.638][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:49.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.643][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.644][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.648][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.653][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.654][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.658][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.662][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.683][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.684][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.688][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.691][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.696][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.698][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.699][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.702][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.704][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.708][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.710][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.713][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.718][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.723][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.728][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:49.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.742][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.748][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.752][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.762][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.763][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:49.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.766][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.767][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:49.768][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:49.769][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.773][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.774][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.783][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.798][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.802][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.807][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.821][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.823][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:49.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:49.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-09-07 16:06:49.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:49.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:49.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:50.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.134][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.135][private$selectFields]
biodb.TRACE[2024-09-07 16:06:50.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:50.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:50.139][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.145][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.148][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.153][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.154][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.158][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.162][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.167][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.177][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.181][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.183][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.184][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.186][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.195][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.197][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.198][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.200][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.205][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.206][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.210][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.215][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.219][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.230][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.231][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.233][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.244][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.247][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.248][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.252][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.257][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.258][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.259][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:50.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.261][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.263][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:50.264][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:50.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.270][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.273][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.278][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.279][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.283][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.293][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.297][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.308][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.313][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.317][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.322][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:50.489][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:50.490][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:06:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:50.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:50.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:50.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:50.573][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:50.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:50.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:06:50.580][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:50.582][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:06:50.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:50.589][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:50.590][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:06:50.592][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:50.594][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:06:50.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:50.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:50.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:50.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:50.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:50.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:50.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:50.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:50.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:50.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:50.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:50.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:50.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:50.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:50.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:50.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:50.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.819][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.820][private$selectFields]
biodb.TRACE[2024-09-07 16:06:50.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:50.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:50.823][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.825][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.829][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.833][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.839][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.842][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.857][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.861][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.870][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.871][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.875][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.884][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.886][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.894][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.895][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.899][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.903][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.908][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.913][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.918][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.924][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.928][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.938][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.939][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:50.941][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:50.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.945][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:50.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:50.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:50.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:50.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:50.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:50.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:50.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:50.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.974][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:50.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.983][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:50.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:50.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:50.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:50.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:50.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:50.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:50.998][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:51.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:51.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:51.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:51.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:51.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:51.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:51.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.315][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.316][private$selectFields]
biodb.TRACE[2024-09-07 16:06:51.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:51.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:51.320][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.321][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.326][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.335][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.344][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.358][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.364][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.367][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.376][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.378][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.381][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.382][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.386][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.390][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.392][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.400][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.405][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.420][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.429][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.434][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.435][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.436][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.441][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.442][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.451][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.454][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.473][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.479][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.480][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.493][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:51.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-09-07 16:06:51.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:51.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:51.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:51.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:51.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:51.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:51.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.806][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.807][private$selectFields]
biodb.TRACE[2024-09-07 16:06:51.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:51.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:51.810][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:51.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.816][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.820][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.826][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.829][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.834][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.839][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.843][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.844][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.854][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.857][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.862][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.868][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.872][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.881][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.882][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.885][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.899][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.909][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.920][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.928][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.929][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:51.931][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:51.932][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.935][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.936][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:51.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:51.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:51.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.944][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.946][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:51.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:51.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:51.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:51.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:51.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:51.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.969][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.970][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:51.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:51.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.978][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:51.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.983][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:51.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:52.147][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:52.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:52.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:52.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:52.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:52.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-09-07 16:06:52.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:52.175][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-09-07 16:06:52.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:52.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:52.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:52.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:52.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.398][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.399][private$selectFields]
biodb.TRACE[2024-09-07 16:06:52.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:52.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:52.402][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.404][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.408][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.418][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.433][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.436][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.445][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.447][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.450][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.464][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.473][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.504][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.513][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.519][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.521][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.526][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.534][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.536][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.538][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.540][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.548][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.563][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.567][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.574][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.581][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.591][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.605][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:52.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:52.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:52.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:52.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:52.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:52.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:52.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:52.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.919][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.920][private$selectFields]
biodb.TRACE[2024-09-07 16:06:52.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:52.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:52.924][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:52.925][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.929][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.930][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.933][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.938][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.939][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:52.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:52.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:52.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.961][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:52.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.966][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.967][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.971][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.972][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:52.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:52.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:52.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.981][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:52.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:52.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.985][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.986][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:52.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:52.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:52.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:52.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:52.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:52.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.010][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.026][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.030][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.039][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.040][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:53.041][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:53.042][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.047][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.055][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.056][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.060][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.080][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.094][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:53.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.396][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:53.397][private$selectFields]
biodb.TRACE[2024-09-07 16:06:53.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:53.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:53.400][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:53.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.405][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.406][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.410][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.416][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.419][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.429][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.434][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.438][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.443][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.444][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.449][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.463][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.471][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.473][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.476][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.486][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.495][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.500][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.501][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.504][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.506][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.514][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.515][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:53.517][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:53.518][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.521][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.523][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.524][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.526][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.531][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.532][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.536][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.546][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.551][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.562][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.567][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:53.744][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:53.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:53.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:53.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:53.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:53.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:06:53.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:53.773][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:06:53.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:53.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:53.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:53.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:53.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:53.862][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:53.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:53.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:53.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:53.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:53.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:53.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:53.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:53.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:53.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.002][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.003][private$selectFields]
biodb.TRACE[2024-09-07 16:06:54.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:54.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:54.007][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.036][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.037][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.041][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.044][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.050][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.055][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.059][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.063][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.064][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.069][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.077][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.079][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.096][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.101][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.106][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.107][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.111][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.112][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.115][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.120][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.121][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.123][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.127][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.128][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.132][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.138][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.141][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.146][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.151][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.156][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.170][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.171][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.175][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.181][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-09-07 16:06:54.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:54.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:54.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:54.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:54.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:54.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:54.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.499][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.500][private$selectFields]
biodb.TRACE[2024-09-07 16:06:54.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:54.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:54.504][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.509][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.510][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.523][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.528][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.532][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.535][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.537][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.548][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.552][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.553][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.567][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.576][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.605][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.610][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.614][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.619][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.620][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:54.621][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:54.622][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.627][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.635][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.637][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.645][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.650][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.651][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.660][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.664][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.665][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.674][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.675][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-09-07 16:06:54.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:54.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:54.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:54.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:54.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:54.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:54.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:54.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:54.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.978][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.979][private$selectFields]
biodb.TRACE[2024-09-07 16:06:54.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:54.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:54.983][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:54.984][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:54.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:54.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.989][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:54.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:54.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:54.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:54.998][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.032][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.041][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.046][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.059][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.068][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.073][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.098][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:55.100][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:55.101][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.105][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.107][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.128][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.129][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.133][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.139][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.153][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:55.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:55.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:55.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:55.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:55.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:55.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:55.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:55.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:55.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:55.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:55.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:55.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-09-07 16:06:55.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:55.363][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-09-07 16:06:55.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:55.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:55.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-09-07 16:06:55.373][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:55.375][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-09-07 16:06:55.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:55.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:55.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:55.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:55.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:55.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:55.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:55.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:55.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:55.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:55.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:55.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:55.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:55.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:55.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:55.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:55.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:55.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:55.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:55.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:55.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:55.463][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:55.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:55.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:55.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:55.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:55.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:55.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:55.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.626][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:55.627][private$selectFields]
biodb.TRACE[2024-09-07 16:06:55.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:55.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:55.630][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:55.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.635][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.636][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.645][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.659][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.664][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.665][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.668][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.673][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.674][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.678][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.679][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.688][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.690][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.692][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.697][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.698][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.706][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.707][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.711][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.736][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.740][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.745][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.750][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.751][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:55.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.753][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.755][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:55.756][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:55.757][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.762][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.771][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.780][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.800][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.805][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.809][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.815][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:55.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:55.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.836][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:55.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:55.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:55.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:55.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:55.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:55.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:56.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:56.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:56.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:56.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:56.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:56.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:56.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.083][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.145][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.147][private$selectFields]
biodb.TRACE[2024-09-07 16:06:56.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:56.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:56.150][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.156][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.160][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.165][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.169][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.181][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.194][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.199][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.208][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.210][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.218][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.227][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.236][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.256][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.257][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.259][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.261][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.264][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.270][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.271][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.275][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.276][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.277][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.281][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.282][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.286][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.290][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.295][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.300][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.309][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.320][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.323][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.325][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.328][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.331][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.334][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:56.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.355][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-09-07 16:06:56.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:56.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:56.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:56.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:56.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:56.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:56.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.663][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.664][private$selectFields]
biodb.TRACE[2024-09-07 16:06:56.665][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:56.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:56.667][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:56.669][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.672][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.673][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.683][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.686][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.691][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.696][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.701][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.712][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.713][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.716][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.717][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.721][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.726][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.727][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.728][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.730][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.732][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.736][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.738][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.740][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.746][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.750][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.760][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.762][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:56.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.775][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.780][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.783][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.790][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.791][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.800][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:56.801][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:56.803][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.807][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.810][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.817][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.822][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.833][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.836][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.842][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:56.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:56.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.858][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.859][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:56.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:56.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:56.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:57.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:57.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:57.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:57.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:57.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:57.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-09-07 16:06:57.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:57.054][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-09-07 16:06:57.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:57.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:57.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:57.142][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:57.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.287][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.288][private$selectFields]
biodb.TRACE[2024-09-07 16:06:57.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:57.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:57.292][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.298][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.306][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.320][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.325][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.335][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.343][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.349][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.350][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.354][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.357][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.359][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.367][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.371][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.376][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.381][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.385][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.387][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.390][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.395][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.396][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.397][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.401][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.410][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.411][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.415][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.416][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.418][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.422][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.432][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.447][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.450][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.454][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.460][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.465][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.473][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.474][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:57.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:57.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:57.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:57.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:57.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:57.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:57.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.799][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.800][private$selectFields]
biodb.TRACE[2024-09-07 16:06:57.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:57.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:57.803][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:57.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.809][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.813][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.822][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.827][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.832][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.836][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.847][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.850][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.855][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.860][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.861][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.862][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.864][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.865][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.870][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.874][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.878][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.879][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.881][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.883][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.888][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.892][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:57.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.897][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.898][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.902][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.906][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.908][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.912][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.916][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.920][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.922][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.923][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:57.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.925][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.926][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:57.928][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:57.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.933][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:57.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:57.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.943][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:57.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:57.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:57.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.951][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:57.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.955][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:57.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:57.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.965][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.966][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:57.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.971][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:57.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:57.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.975][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:57.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:57.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.979][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.980][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:06:58.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.289][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:58.291][private$selectFields]
biodb.TRACE[2024-09-07 16:06:58.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:58.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:58.294][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:58.295][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.299][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.300][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.303][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.308][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.323][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.328][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.329][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.333][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.337][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.339][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.342][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.343][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.347][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.352][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.353][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.354][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.356][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.362][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.363][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.366][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.370][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.372][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.375][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.380][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.384][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.404][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.409][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.410][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.414][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.418][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.421][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.423][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.424][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:58.425][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:58.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.431][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.439][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.440][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.454][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.468][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.476][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.478][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:58.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-09-07 16:06:58.643][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:06:58.644][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:06:58.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:06:58.662][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-09-07 16:06:58.665][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:06:58.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-09-07 16:06:58.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:06:58.671][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-09-07 16:06:58.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:58.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:58.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:06:58.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:06:58.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:58.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:58.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:58.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:58.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:58.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:58.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.903][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:58.904][private$selectFields]
biodb.TRACE[2024-09-07 16:06:58.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:58.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:58.908][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:58.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.913][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.914][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.917][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.923][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.936][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:58.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.941][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:58.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.946][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:58.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.951][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:58.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.955][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.956][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:58.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:58.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:58.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:58.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.966][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.967][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:58.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.970][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:58.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:58.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.974][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.975][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:58.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:58.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.979][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:58.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:58.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:58.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:58.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:58.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:58.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:58.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.003][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.004][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.017][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.018][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.028][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.029][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.032][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.034][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.035][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.040][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.049][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.067][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.068][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.076][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.081][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.082][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.091][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-09-07 16:06:59.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:59.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:59.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:59.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:59.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:59.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:59.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.421][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.422][private$selectFields]
biodb.TRACE[2024-09-07 16:06:59.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:59.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:59.425][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.431][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.441][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.454][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.460][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.468][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.469][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.473][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.474][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.483][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.485][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.487][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.493][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.501][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.506][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.511][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.535][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.536][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.544][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.545][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.547][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.550][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:59.551][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:06:59.553][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.556][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.557][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.559][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.561][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.566][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.567][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.571][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.575][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.580][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.585][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.590][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.591][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.595][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.612][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:06:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-09-07 16:06:59.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:06:59.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:06:59.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:06:59.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:06:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:06:59.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:06:59.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:06:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.921][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.922][private$selectFields]
biodb.TRACE[2024-09-07 16:06:59.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:06:59.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:06:59.926][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-09-07 16:06:59.927][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.932][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.935][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:06:59.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.941][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:06:59.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:06:59.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.945][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:06:59.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:06:59.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:06:59.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:06:59.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.959][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.960][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:06:59.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:06:59.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.969][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.970][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:06:59.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.973][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:06:59.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:06:59.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.978][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:06:59.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:06:59.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.983][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.984][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.985][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:06:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.988][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:06:59.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:06:59.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.993][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.994][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:06:59.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:06:59.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:06:59.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:06:59.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.008][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.010][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:07:00.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:07:00.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.014][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:07:00.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:07:00.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.018][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.023][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:07:00.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:07:00.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.033][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.039][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.042][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.044][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:07:00.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:07:00.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.047][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:07:00.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:07:00.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.052][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.053][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:07:00.055][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:07:00.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.058][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:07:00.059][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-09-07 16:07:00.061][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:07:00.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:07:00.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.064][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.065][ef$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:07:00.067][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:07:00.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.075][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:07:00.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:07:00.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:07:00.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:07:00.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.083][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:07:00.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:07:00.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.107][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:07:00.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:07:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.112][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.113][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-09-07 16:07:00.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:07:00.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:07:00.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:07:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:07:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:07:00.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:07:00.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:07:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:07:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:07:00.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:07:00.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-09-07 16:07:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-09-07 16:07:00.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:07:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:07:00.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:07:00.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:07:00.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:07:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:07:00.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:07:00.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:07:00.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:07:00.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:07:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:07:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-09-07 16:07:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-09-07 16:07:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-09-07 16:07:00.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:07:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:07:00.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-09-07 16:07:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:07:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:07:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:07:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:07:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:07:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:07:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:07:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:07:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:07:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:07:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-09-07 16:07:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-09-07 16:07:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-09-07 16:07:00.284][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:07:00.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:07:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.296][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:07:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:07:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:07:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:07:00.312][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:07:00.314][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-09-07 16:07:00.315][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-09-07 16:07:00.316][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:07:00.317][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:07:00.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:07:00.319][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:07:00.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:07:00.322][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:07:00.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1394 ]
>
> proc.time()
user system elapsed
89.03 5.95 211.39
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
Running 'testthat.R'
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)