Jiri Hon
| Snapshot Date: 2024-10-18 13:40 -0400 (Fri, 18 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/triplex |
| git_branch: devel |
| git_last_commit: 9ce9251 |
| git_last_commit_date: 2024-04-30 10:31:42 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-10-19 11:48 -0400 (Sat, 19 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4474 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4733 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4479 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4509 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4457 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2183/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| triplex 1.45.0 (landing page) Jiri Hon
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the triplex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/triplex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: triplex |
| Version: 1.45.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL triplex |
| StartedAt: 2024-10-18 15:10:59 -0400 (Fri, 18 Oct 2024) |
| EndedAt: 2024-10-18 15:11:12 -0400 (Fri, 18 Oct 2024) |
| EllapsedTime: 12.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL triplex
###
##############################################################################
##############################################################################
* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘triplex’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_init_triplex.c -o R_init_triplex.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c align.c -o align.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c align_interface.c -o align_interface.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c dl_list.c -o dl_list.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c interval.c -o interval.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c libtriplex.c -o libtriplex.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c progress.c -o progress.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c search.c -o search.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/IRanges/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/XVector/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Biostrings/include' -I/usr/local/include -fpic -g -O2 -Wall -c search_interface.c -o search_interface.o
search_interface.c: In function ‘decode_DNAString’:
search_interface.c:371:84: warning: pointer used after ‘free’ [-Wuse-after-free]
371 | error("Unsupported symbol '%c' in input sequence.", dna.seq[i]);
| ^
search_interface.c:370:25: note: call to ‘free’ here
370 | free(dna.seq);
| ^~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o XVector_stubs.o align.o align_interface.o dl_list.o interval.o libtriplex.o progress.o search.o search_interface.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-triplex/00new/triplex/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’
** testing if installed package keeps a record of temporary installation path
* DONE (triplex)