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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data snpStats
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* checking for file ‘snpStats/DESCRIPTION’ ... OK
* preparing ‘snpStats’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Fst-vignette.Rnw’ using Sweave
Loading required package: snpStats
Loading required package: survival
Loading required package: Matrix
--- finished re-building ‘Fst-vignette.Rnw’

--- re-building ‘data-input-vignette.Rnw’ using Sweave
--- finished re-building ‘data-input-vignette.Rnw’

--- re-building ‘differences.Rnw’ using Sweave
--- finished re-building ‘differences.Rnw’

--- re-building ‘imputation-vignette.Rnw’ using Sweave
--- finished re-building ‘imputation-vignette.Rnw’

--- re-building ‘ld-vignette.Rnw’ using Sweave

 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: ld(ceph.1mb[, 1], ceph.1mb[, 5], stats = "OR")
 2: eval(expr, .GlobalEnv)
 3: eval(expr, .GlobalEnv)
 4: withVisible(eval(expr, .GlobalEnv))
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7: tryCatchList(expr, classes, parentenv, handlers)
 8: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call, nlines = 1L)        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
 9: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
10: evalFunc(ce, options)
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(evalFunc(ce, options), finally = {    cat("\n")    sink()})
13: driver$runcode(drobj, chunk, chunkopts)
14: utils::Sweave(...)
15: engine$weave(file, quiet = quiet, encoding = enc)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
20: tools::buildVignettes(dir = ".", tangle = TRUE)
An irrecoverable exception occurred. R is aborting now ...