Till Soerensen
| Snapshot Date: 2025-01-03 13:40 -0500 (Fri, 03 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 17b4bb8 |
| git_last_commit_date: 2024-11-25 08:59:04 -0500 (Mon, 25 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-04 11:46 -0500 (Sat, 04 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4756 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4475 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4435 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4383 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1015/2275 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.39.3 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.39.3 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-01-03 23:44:38 -0000 (Fri, 03 Jan 2025) |
| EndedAt: 2025-01-03 23:49:37 -0000 (Fri, 03 Jan 2025) |
| EllapsedTime: 298.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=158<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 12 iterations
cluster 2(N=73) has 3 sub-cluster at 3 (7), ICL=85<>30
split 2 into 3 clusters
cluster 1(N=230) has 2 sub-cluster at 2 (6), ICL=42<>30
split 1 into 2 clusters
cluster 1(N=230) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 10 iterations
cluster 3(N=34) has 2 sub-cluster at 2 (100), ICL=104<>34
split 3 into 2 clusters
cluster 1(N=65) has 2 sub-cluster at 2 (7), ICL=36<>34
split 1 into 2 clusters
cluster 4(N=68) has 5 sub-cluster at 5 (9), ICL=17<>34
cluster 5(N=70) has 5 sub-cluster at 6 (20), ICL=12<>34
cluster 1(N=65) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->7 N=1210
EM 6 takes 0 mins, 8 iterations
cluster 1(N=56) has 3 sub-cluster at 3 (6), ICL=37<>37
cluster 6(N=109) has 2 sub-cluster at 2 (100), ICL=36<>37
cluster 5(N=142) has 2 sub-cluster at 2 (7), ICL=30<>37
cluster 4(N=44) has 2 sub-cluster at 2 (14), ICL=15<>37
cluster 2(N=70) has 5 sub-cluster at 5 (19), ICL=9<>37
cluster 1(N=56) has 3 sub-cluster at 3 (6), ICL=0<>37
Model Refinement takes 0.12 mins(max 3: 0.033)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 7 iterations
cluster 6(N=243) has 2 sub-cluster at 2 (7), ICL=60<>41
split 6 into 2 clusters
cluster 1(N=111) has 3 sub-cluster at 3 (13), ICL=54<>41
split 1 into 3 clusters
cluster 5(N=306) has 2 sub-cluster at 2 (6), ICL=32<>41
cluster 4(N=90) has 2 sub-cluster at 2 (8), ICL=22<>41
cluster 2(N=111) has 5 sub-cluster at 5 (19), ICL=22<>41
cluster 1(N=111) has 3 sub-cluster at 3 (13), ICL=0<>41
Model Refinement takes 0.2 mins(max 3: 0.067)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 9 takes 0 mins, 9 iterations
cluster 7(N=559) has 2 sub-cluster at 2 (6), ICL=32<>45
cluster 4(N=261) has 2 sub-cluster at 2 (7), ICL=28<>45
cluster 3(N=41) has 2 sub-cluster at 2 (100), ICL=24<>45
cluster 6(N=190) has 6 sub-cluster at 6 (45), ICL=22<>45
cluster 2(N=71) has 2 sub-cluster at 2 (10), ICL=21<>45
cluster 9(N=48) has 2 sub-cluster at 3 (6), ICL=10<>45
cluster 1(N=157) has 7 sub-cluster at 7 (42), ICL=7.6<>45
cluster 8(N=439) has 2 sub-cluster at 2 (24), ICL=0.83<>45
cluster 1(N=157) has 7 sub-cluster at 7 (42), ICL=0<>45
Model Refinement takes 0.22 mins(max 5: 0.083)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0 mins, 5 iterations
cluster 4(N=556) has 3 sub-cluster at 3 (7), ICL=54<>48
split 4 into 3 clusters
cluster 8(N=910) has 3 sub-cluster at 3 (8), ICL=49<>48
split 8 into 3 clusters
cluster 7(N=1121) has 2 sub-cluster at 2 (6), ICL=45<>48
cluster 2(N=158) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 6(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 9(N=68) has 3 sub-cluster at 3 (16), ICL=15<>48
cluster 1(N=310) has 7 sub-cluster at 8 (46), ICL=5.9<>48
cluster 1(N=310) has 7 sub-cluster at 8 (46), ICL=0<>48
Model Refinement takes 0.32 mins(max 5: 0.1)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0.017 mins, 7 iterations
cluster 9(N=1119) has 2 sub-cluster at 2 (6), ICL=47<>48
cluster 2(N=158) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 8(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 6(N=81) has 2 sub-cluster at 2 (14), ICL=19<>48
cluster 4(N=234) has 4 sub-cluster at 4 (19), ICL=18<>48
cluster 13(N=51) has 2 sub-cluster at 2 (11), ICL=8.7<>48
cluster 1(N=309) has 2 sub-cluster at 2 (7), ICL=6.9<>48
cluster 5(N=308) has 7 sub-cluster at 8 (35), ICL=6.4<>48
cluster 12(N=47) has 2 sub-cluster at 2 (100), ICL=4.2<>48
cluster 3(N=77) has 3 sub-cluster at 3 (87), ICL=3.6<>48
cluster 1(N=309) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.37 mins(max 7: 0.1)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=153<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=90) has 2 sub-cluster at 2 (7), ICL=107<>25
split 2 into 2 clusters
cluster 1(N=214) has 2 sub-cluster at 2 (7), ICL=37<>25
split 1 into 2 clusters
cluster 1(N=214) has 2 sub-cluster at 2 (7), ICL=0<>25
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 3(N=140) has 2 sub-cluster at 2 (6), ICL=107<>28
split 3 into 2 clusters
cluster 4(N=62) has 3 sub-cluster at 3 (13), ICL=23<>28
cluster 2(N=27) has 2 sub-cluster at 2 (10), ICL=14<>28
cluster 1(N=384) has 4 sub-cluster at 4 (24), ICL=3.7<>28
cluster 1(N=384) has 4 sub-cluster at 4 (24), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 9 iterations
cluster 4(N=105) has 2 sub-cluster at 2 (11), ICL=57<>31
split 4 into 2 clusters
cluster 2(N=75) has 2 sub-cluster at 2 (7), ICL=39<>31
split 2 into 2 clusters
cluster 3(N=153) has 7 sub-cluster at 7 (88), ICL=35<>31
split 3 into 7 clusters
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->13 N=2420
EM 11 takes 0 mins, 11 iterations
cluster 2(N=48) has 2 sub-cluster at 2 (6), ICL=33<>34
cluster 11(N=234) has 3 sub-cluster at 3 (11), ICL=33<>34
cluster 10(N=99) has 3 sub-cluster at 3 (18), ICL=22<>34
cluster 9(N=135) has 6 sub-cluster at 6 (27), ICL=21<>34
cluster 8(N=186) has 6 sub-cluster at 8 (49), ICL=15<>34
cluster 3(N=80) has 5 sub-cluster at 6 (31), ICL=15<>34
cluster 7(N=44) has 3 sub-cluster at 3 (13), ICL=12<>34
cluster 4(N=82) has 3 sub-cluster at 4 (59), ICL=10<>34
cluster 5(N=12) has 2 sub-cluster at 2 (100), ICL=0.085<>34
cluster 2(N=48) has 2 sub-cluster at 2 (6), ICL=0<>34
Model Refinement takes 0.23 mins(max 1: 0.083)
Fit Model 5 of (6/10) K=11->11 N=4841
EM 9 takes 0.017 mins, 12 iterations
cluster 9(N=464) has 2 sub-cluster at 2 (16), ICL=125<>37
split 9 into 2 clusters
cluster 2(N=95) has 2 sub-cluster at 2 (7), ICL=57<>37
split 2 into 2 clusters
cluster 7(N=283) has 3 sub-cluster at 3 (16), ICL=37<>37
cluster 8(N=206) has 7 sub-cluster at 7 (46), ICL=25<>37
cluster 5(N=103) has 3 sub-cluster at 3 (10), ICL=15<>37
cluster 4(N=245) has 5 sub-cluster at 6 (68), ICL=13<>37
cluster 3(N=168) has 5 sub-cluster at 7 (32), ICL=9.9<>37
cluster 6(N=422) has 7 sub-cluster at 7 (44), ICL=2.7<>37
cluster 2(N=95) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.28 mins(max 1: 0.083)
Fit Model 6 of (6/10) K=9->11 N=9682
EM 11 takes 0.017 mins, 6 iterations
cluster 8(N=558) has 3 sub-cluster at 3 (8), ICL=53<>40
split 8 into 3 clusters
cluster 9(N=392) has 2 sub-cluster at 2 (7), ICL=39<>40
cluster 2(N=123) has 2 sub-cluster at 2 (9), ICL=29<>40
cluster 10(N=916) has 4 sub-cluster at 4 (15), ICL=25<>40
cluster 6(N=231) has 4 sub-cluster at 4 (27), ICL=20<>40
cluster 3(N=73) has 5 sub-cluster at 6 (39), ICL=20<>40
cluster 4(N=313) has 2 sub-cluster at 2 (8), ICL=10<>40
cluster 2(N=123) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.1)
Fit Model 7 of (6/10) K=11->13 N=9682
EM 13 takes 0.017 mins, 14 iterations
cluster 3(N=72) has 2 sub-cluster at 2 (13), ICL=65<>40
split 3 into 2 clusters
cluster 11(N=392) has 2 sub-cluster at 2 (7), ICL=53<>40
split 11 into 2 clusters
cluster 12(N=903) has 3 sub-cluster at 3 (31), ICL=42<>40
split 12 into 3 clusters
cluster 2(N=122) has 3 sub-cluster at 3 (27), ICL=27<>40
cluster 10(N=89) has 5 sub-cluster at 5 (25), ICL=22<>40
cluster 9(N=197) has 6 sub-cluster at 7 (59), ICL=19<>40
cluster 6(N=215) has 4 sub-cluster at 5 (41), ICL=18<>40
cluster 8(N=359) has 6 sub-cluster at 7 (28), ICL=13<>40
cluster 4(N=308) has 2 sub-cluster at 2 (8), ICL=10<>40
cluster 2(N=122) has 3 sub-cluster at 3 (27), ICL=0<>40
Model Refinement takes 0.38 mins(max 1: 0.1)
Fit Model 8 of (6/10) K=13->17 N=9682
EM 16 takes 0.017 mins, 4 iterations
cluster 14(N=100) has 2 sub-cluster at 2 (100), ICL=50<>40
split 14 into 2 clusters
cluster 2(N=123) has 2 sub-cluster at 2 (9), ICL=29<>40
cluster 6(N=210) has 3 sub-cluster at 4 (21), ICL=25<>40
cluster 10(N=87) has 4 sub-cluster at 4 (42), ICL=22<>40
cluster 9(N=187) has 7 sub-cluster at 8 (51), ICL=20<>40
cluster 3(N=72) has 3 sub-cluster at 4 (29), ICL=19<>40
cluster 12(N=91) has 4 sub-cluster at 7 (28), ICL=17<>40
cluster 8(N=366) has 7 sub-cluster at 7 (30), ICL=15<>40
cluster 11(N=335) has 8 sub-cluster at 8 (31), ICL=12<>40
cluster 13(N=381) has 7 sub-cluster at 8 (69), ICL=12<>40
cluster 16(N=51) has 2 sub-cluster at 2 (11), ICL=11<>40
cluster 4(N=308) has 2 sub-cluster at 2 (8), ICL=10<>40
cluster 2(N=123) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.43 mins(max 1: 0.083)
Fit Model 9 of (6/10) K=16->17 N=9682
EM 17 takes 0.1 mins, 34 iterations
cluster 2(N=122) has 3 sub-cluster at 3 (27), ICL=27<>40
cluster 14(N=93) has 2 sub-cluster at 7 (22), ICL=21<>40
cluster 10(N=85) has 3 sub-cluster at 3 (28), ICL=20<>40
cluster 3(N=72) has 3 sub-cluster at 4 (30), ICL=19<>40
cluster 6(N=208) has 6 sub-cluster at 7 (38), ICL=19<>40
cluster 8(N=384) has 6 sub-cluster at 7 (31), ICL=16<>40
cluster 12(N=104) has 4 sub-cluster at 6 (32), ICL=16<>40
cluster 11(N=330) has 6 sub-cluster at 7 (23), ICL=13<>40
cluster 9(N=167) has 5 sub-cluster at 6 (25), ICL=12<>40
cluster 17(N=51) has 2 sub-cluster at 2 (11), ICL=11<>40
cluster 4(N=308) has 2 sub-cluster at 2 (8), ICL=10<>40
cluster 13(N=375) has 8 sub-cluster at 8 (35), ICL=3.3<>40
cluster 16(N=543) has 8 sub-cluster at 8 (27), ICL=0.53<>40
cluster 2(N=122) has 3 sub-cluster at 3 (27), ICL=0<>40
Model Refinement takes 0.45 mins(max 1: 0.1)
Fit Model 10 of (6/10) K=17->17 N=9682
EM 17 takes 0.033 mins, 16 iterations
Process completed at10
Major Iteration (Trans) (6/4) takes 2.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted