| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"
| 4756 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"
| 4475 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
| 4435 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
| 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
| 4383 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
BUILD results for genoCN on lconway
To the developers/maintainers of the genoCN package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genoCN.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data genoCN
###
##############################################################################
##############################################################################
* checking for file ‘genoCN/DESCRIPTION’ ... OK
* preparing ‘genoCN’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘genoCN’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tnorm_mle.c -o tnorm_mle.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utility.c -o utility.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c xCNV.c -o xCNV.o
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:449:25: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:449:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:450:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:455:33: error: expected expression
v_old = (double *)Calloc(N, double);
^
xCNV.c:456:33: error: expected expression
v_new = (double *)Calloc(N, double);
^
xCNV.c:458:32: error: expected expression
path_m = (int**) Calloc(L, int*);
^
xCNV.c:459:36: error: expected expression
path_m[0] = (int*) Calloc(L*N, int);
^
xCNV.c:464:31: error: expected expression
tmp = (double *)Calloc(N, double);
^
xCNV.c:532:5: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(v_old);
^
xCNV.c:532:5: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:579:19: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
v = (double *)Calloc(N, double);
^
xCNV.c:579:29: error: expected expression
v = (double *)Calloc(N, double);
^
xCNV.c:581:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:582:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:613:5: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(v);
^
xCNV.c:652:19: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
v = (double *)Calloc(N, double);
^
xCNV.c:652:29: error: expected expression
v = (double *)Calloc(N, double);
^
xCNV.c:654:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:655:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:683:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(v);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
2 warnings and 20 errors generated.
make: *** [xCNV.o] Error 1
ERROR: compilation failed for package ‘genoCN’
* removing ‘/private/tmp/RtmpGmyBDM/Rinstc029151b437d/genoCN’
-----------------------------------
ERROR: package installation failed
