Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-10-18 11:45 -0400 (Fri, 18 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4474 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4733 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4479 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4509 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4457 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 603/2273 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
dreamlet 1.3.3 (landing page) Gabriel Hoffman
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the dreamlet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dreamlet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: dreamlet |
Version: 1.3.3 |
Command: chmod a+r dreamlet -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dreamlet |
StartedAt: 2024-10-17 18:10:16 -0400 (Thu, 17 Oct 2024) |
EndedAt: 2024-10-17 18:16:25 -0400 (Thu, 17 Oct 2024) |
EllapsedTime: 369.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r dreamlet -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dreamlet ### ############################################################################## ############################################################################## * checking for file 'dreamlet/DESCRIPTION' ... OK * preparing 'dreamlet': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages Loading required namespace: variancePartition Loading required namespace: dreamlet * saving partial Rd database * creating vignettes ... ERROR --- re-building 'cell_covs.Rmd' using rmarkdown Quitting from lines 114-130 [processAssays] (cell_covs.Rmd) Error: processing vignette 'cell_covs.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'cell_covs.Rmd' --- re-building 'dreamlet.Rmd' using rmarkdown Quitting from lines 192-202 [test] (dreamlet.Rmd) Error: processing vignette 'dreamlet.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'dreamlet.Rmd' --- re-building 'errors.Rmd' using rmarkdown --- finished re-building 'errors.Rmd' --- re-building 'h5ad_on_disk.Rmd' using rmarkdown --- finished re-building 'h5ad_on_disk.Rmd' --- re-building 'mashr.Rmd' using rmarkdown --- finished re-building 'mashr.Rmd' --- re-building 'non_lin_eff.Rmd' using rmarkdown Quitting from lines 95-116 [Age] (non_lin_eff.Rmd) Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'non_lin_eff.Rmd' SUMMARY: processing the following files failed: 'cell_covs.Rmd' 'dreamlet.Rmd' 'non_lin_eff.Rmd' Error: Vignette re-building failed. Execution halted