Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:40 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 548/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
destiny 3.19.0 (landing page) Philipp Angerer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the destiny package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/destiny.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: destiny |
Version: 3.19.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny |
StartedAt: 2024-06-27 16:30:47 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 16:33:15 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 147.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny ### ############################################################################## ############################################################################## * checking for file ‘destiny/DESCRIPTION’ ... OK * preparing ‘destiny’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DPT.Rmd’ using rmarkdown 2024-06-27 16:31:08.840 R[43091:10623635] XType: Using static font registry. --- finished re-building ‘DPT.Rmd’ --- re-building ‘Diffusion-Map-recap.Rmd’ using rmarkdown --- finished re-building ‘Diffusion-Map-recap.Rmd’ --- re-building ‘Diffusion-Maps.Rmd’ using rmarkdown Quitting from lines 12-34 [unnamed-chunk-1] (Diffusion-Maps.Rmd) Error: processing vignette 'Diffusion-Maps.Rmd' failed with diagnostics: package or namespace load failed for 'readxl' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/readxl/libs/readxl.so': dlopen(/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/readxl/libs/readxl.so, 0x0006): Symbol not found: _iconv Referenced from: <FD6FB17B-8454-3F39-A16C-DE444F5ECD91> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/readxl/libs/readxl.so Expected in: <5071C9AE-D5F8-3824-BAFF-EA562080A74A> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib --- failed re-building ‘Diffusion-Maps.Rmd’ --- re-building ‘Gene-Relevance.Rmd’ using rmarkdown --- finished re-building ‘Gene-Relevance.Rmd’ --- re-building ‘Global-Sigma.Rmd’ using rmarkdown --- finished re-building ‘Global-Sigma.Rmd’ --- re-building ‘tidyverse.Rmd’ using rmarkdown --- finished re-building ‘tidyverse.Rmd’ SUMMARY: processing the following file failed: ‘Diffusion-Maps.Rmd’ Error: Vignette re-building failed. Execution halted