Benilton S Carvalho
| Snapshot Date: 2024-11-27 13:40 -0500 (Wed, 27 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/crlmm |
| git_branch: devel |
| git_last_commit: de849d9 |
| git_last_commit_date: 2024-10-29 09:31:05 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-28 12:16 -0500 (Thu, 28 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4398 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 457/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crlmm 1.65.0 (landing page) Benilton S Carvalho
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the crlmm package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crlmm.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: crlmm |
| Version: 1.65.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data crlmm |
| StartedAt: 2024-11-27 16:28:55 -0500 (Wed, 27 Nov 2024) |
| EndedAt: 2024-11-27 16:29:01 -0500 (Wed, 27 Nov 2024) |
| EllapsedTime: 5.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data crlmm
###
##############################################################################
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* checking for file ‘crlmm/DESCRIPTION’ ... OK
* preparing ‘crlmm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘crlmm’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gtypeCaller.c -o gtypeCaller.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c trimmed.c -o trimmed.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/preprocessCore/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils.c -o utils.o
utils.c:56:18: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
double *buffer=Calloc(n, double);
^
utils.c:56:28: error: expected expression
double *buffer=Calloc(n, double);
^
utils.c:77:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(buffer);
^
utils.c:77:3: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
utils.c:82:18: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
double *datvec=Calloc(cols,double);
^
utils.c:82:30: error: expected expression
double *datvec=Calloc(cols,double);
^
utils.c:83:29: error: expected expression
int *classvec=Calloc(cols,int);
^
utils.c:112:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(datvec);
^
utils.c:119:20: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
double *buffer = Calloc(length,double);
^
utils.c:119:34: error: expected expression
double *buffer = Calloc(length,double);
^
utils.c:128:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(buffer);
^
utils.c:141:18: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
double *buffer=Calloc(n, double);
^
utils.c:141:28: error: expected expression
double *buffer=Calloc(n, double);
^
utils.c:153:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(buffer);
^
utils.c:208:18: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
double *datvec=Calloc(cols,double);
^
utils.c:208:30: error: expected expression
double *datvec=Calloc(cols,double);
^
utils.c:209:29: error: expected expression
int *classvec=Calloc(cols,int);
^
utils.c:238:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(datvec);
^
17 errors generated.
make: *** [utils.o] Error 1
ERROR: compilation failed for package ‘crlmm’
* removing ‘/private/tmp/RtmpqkqkZV/Rinst2b382bcbac61/crlmm’
-----------------------------------
ERROR: package installation failed