Andreas Mitterecker
| Snapshot Date: 2025-01-03 13:40 -0500 (Fri, 03 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/cn.farms |
| git_branch: devel |
| git_last_commit: 8600141 |
| git_last_commit_date: 2024-10-29 09:36:23 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-04 11:39 -0500 (Sat, 04 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4756 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4475 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4435 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4383 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 379/2275 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cn.farms 1.55.0 (landing page) Andreas Mitterecker
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the cn.farms package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cn.farms.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cn.farms |
| Version: 1.55.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cn.farms |
| StartedAt: 2025-01-03 16:33:10 -0500 (Fri, 03 Jan 2025) |
| EndedAt: 2025-01-03 16:33:12 -0500 (Fri, 03 Jan 2025) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cn.farms
###
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* checking for file ‘cn.farms/DESCRIPTION’ ... OK
* preparing ‘cn.farms’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘cn.farms’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c R_init_cnfarms.c -o R_init_cnfarms.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c laplace.cpp -o laplace.o
In file included from laplace.cpp:7:
laplace.cpp: In function ‘SEXPREC* momentsGauss(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
laplace.cpp:448:23: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
448 | PROTECT(RET = allocVector(VECSXP, 8));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
laplace.cpp:519:37: error: ‘mkChar’ was not declared in this scope
519 | SET_STRING_ELT(namesRET, 0, mkChar("normConst"));
| ^~~~~~
laplace.cpp:528:9: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’?
528 | setAttrib(RET, R_NamesSymbol, namesRET);
| ^~~~~~~~~
| Rf_setAttrib
laplace.cpp:442:13: warning: unused variable ‘method’ [-Wunused-variable]
442 | int method=0;
| ^~~~~~
laplace.cpp: In function ‘SEXPREC* momentsIntegrationTrapez(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
laplace.cpp:603:23: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
603 | PROTECT(RET = allocVector(VECSXP, 8));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
laplace.cpp:708:37: error: ‘mkChar’ was not declared in this scope
708 | SET_STRING_ELT(namesRET, 0, mkChar("normConst"));
| ^~~~~~
laplace.cpp:717:9: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’?
717 | setAttrib(RET, R_NamesSymbol, namesRET);
| ^~~~~~~~~
| Rf_setAttrib
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: laplace.o] Error 1
ERROR: compilation failed for package ‘cn.farms’
* removing ‘/tmp/RtmpeBNYfw/Rinste52144210610e/cn.farms’
-----------------------------------
ERROR: package installation failed