Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4779
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4550
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4578
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4530
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-03-23 18:17:07 -0400 (Sun, 23 Mar 2025)

EndedAt: 2025-03-23 18:17:31 -0400 (Sun, 23 Mar 2025)

EllapsedTime: 23.3 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-23 18:17:22.418][biodb::testContext]
biodb.INFO [2025-03-23 18:17:22.421][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:22.421][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-23 18:17:22.422][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:22.422][biodb::testContext]
biodb.INFO [2025-03-23 18:17:22.422][biodb::testThat]
biodb.INFO [2025-03-23 18:17:22.423][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-23 18:17:22.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:22.423][biodb::testThat]
biodb.INFO [2025-03-23 18:17:22.462][biodb::testContext]
biodb.INFO [2025-03-23 18:17:22.462][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:22.463][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-23 18:17:22.463][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:22.463][biodb::testContext]
biodb.INFO [2025-03-23 18:17:22.467][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:22.468][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:22.471][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:22.471][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-23 18:17:22.472][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.473][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-23 18:17:22.482][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.483][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-23 18:17:22.484][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.485][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-23 18:17:22.485][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-23 18:17:22.485][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-23 18:17:22.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.486][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-23 18:17:22.486][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-23 18:17:22.487][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.488][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-23 18:17:22.488][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-23 18:17:22.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.489][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-23 18:17:22.489][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-23 18:17:22.489][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-23 18:17:22.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.490][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-23 18:17:22.491][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.492][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-23 18:17:22.492][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-23 18:17:22.492][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-23 18:17:22.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.493][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:22.493][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-23 18:17:22.493][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-23 18:17:22.494][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-23 18:17:22.494][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-23 18:17:22.494][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-23 18:17:22.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.495][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-23 18:17:22.495][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-23 18:17:22.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.496][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-23 18:17:22.497][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-23 18:17:22.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.498][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-23 18:17:22.498][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-23 18:17:22.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.499][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-23 18:17:22.499][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-23 18:17:22.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.500][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-23 18:17:22.500][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-23 18:17:22.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.501][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:22.502][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-23 18:17:22.508][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-23 18:17:22.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.509][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-23 18:17:22.510][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-23 18:17:22.510][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-23 18:17:22.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.512][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-23 18:17:22.523][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.528][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-23 18:17:22.528][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.528][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:22.529][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.529][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.529][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.529][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.530][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:22.530][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:22.530][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.530][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:22.531][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:22.532][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:22.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.532][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.532][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:22.533][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.533][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.533][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.534][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.536][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.537][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.537][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.537][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-23 18:17:22.538][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.538][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:22.538][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.539][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:22.539][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.539][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.539][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.539][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.540][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:22.540][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:22.540][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.541][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-23 18:17:22.541][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:22.541][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.541][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.542][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.542][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:22.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.543][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.543][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.543][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.544][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.544][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.544][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.544][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.545][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-23 18:17:22.545][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.545][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-23 18:17:22.546][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.546][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:22.546][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.546][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.547][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.547][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.547][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:22.548][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:22.548][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.548][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-23 18:17:22.548][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:22.549][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.549][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.549][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:22.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.550][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.550][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:22.550][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.550][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.551][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.551][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.551][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.552][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.552][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.552][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-23 18:17:22.553][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.553][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:22.553][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.553][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:22.554][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.554][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.554][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.554][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.555][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:22.555][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:22.555][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.555][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-23 18:17:22.556][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:22.556][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.556][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.556][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.557][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:22.557][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.557][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:22.558][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.558][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.558][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.558][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.559][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.559][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.559][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.559][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.561][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:22.561][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.580][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-23 18:17:22.585][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-23 18:17:22.585][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-23 18:17:22.585][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-23 18:17:22.586][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-23 18:17:22.586][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:22.587][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:22.587][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:22.587][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-23 18:17:22.588][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:22.588][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:22.588][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-23 18:17:22.589][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:22.589][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:22.589][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-23 18:17:22.590][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:22.590][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-23 18:17:22.591][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-23 18:17:22.591][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-23 18:17:22.591][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-23 18:17:22.592][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-23 18:17:22.592][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-23 18:17:22.592][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-23 18:17:22.593][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-23 18:17:22.593][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-23 18:17:22.593][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-23 18:17:22.594][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-23 18:17:22.594][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-23 18:17:22.595][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-23 18:17:22.595][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-23 18:17:22.595][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-23 18:17:22.596][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-23 18:17:22.596][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-23 18:17:22.596][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-23 18:17:22.597][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-23 18:17:22.597][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-23 18:17:22.597][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-23 18:17:22.598][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-23 18:17:22.598][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-23 18:17:22.598][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-23 18:17:22.599][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-23 18:17:22.599][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-23 18:17:22.600][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-23 18:17:22.600][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-23 18:17:22.600][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-23 18:17:22.601][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-23 18:17:22.601][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-23 18:17:22.601][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-23 18:17:22.602][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-23 18:17:22.602][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-23 18:17:22.602][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-23 18:17:22.603][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-23 18:17:22.603][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-23 18:17:22.604][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-23 18:17:22.604][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-23 18:17:22.604][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-23 18:17:22.605][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-23 18:17:22.605][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-23 18:17:22.605][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-23 18:17:22.606][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-23 18:17:22.606][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-23 18:17:22.606][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-23 18:17:22.607][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-23 18:17:22.607][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-23 18:17:22.607][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-23 18:17:22.608][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-23 18:17:22.608][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-23 18:17:22.609][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-23 18:17:22.609][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-23 18:17:22.609][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-23 18:17:22.610][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-23 18:17:22.610][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-23 18:17:22.610][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-23 18:17:22.611][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-23 18:17:22.611][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-23 18:17:22.611][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-23 18:17:22.612][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-23 18:17:22.612][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-23 18:17:22.613][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-23 18:17:22.613][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-23 18:17:22.613][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-23 18:17:22.614][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-23 18:17:22.614][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-23 18:17:22.616][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-23 18:17:22.616][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:22.618][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:22.618][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.618][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:22.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:22.662][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:22.665][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:22.666][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.666][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.666][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.666][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:22.667][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.667][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-23 18:17:22.667][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.667][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.668][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-23 18:17:22.668][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:22.668][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.668][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-23 18:17:22.669][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:22.670][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:22.670][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-23 18:17:22.670][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-23 18:17:22.670][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-23 18:17:22.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.671][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:22.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:22.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:22.671][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:22.671][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:22.671][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-23 18:17:22.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.672][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.672][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:22.672][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:22.674][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-23 18:17:22.675][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:22.675][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:22.676][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:22.676][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:22.686][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:22.686][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-23 18:17:22.688][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:22.690][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:22.692][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:22.692][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:22.693][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-23 18:17:22.693][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-23 18:17:22.693][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:22.693][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-23 18:17:22.694][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:22.694][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:22.694][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-23 18:17:22.694][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-23 18:17:22.695][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:22.703][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:22.704][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:22.704][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:22.704][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:22.705][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:22.705][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-23 18:17:22.708][biodb::testThat]
biodb.INFO [2025-03-23 18:17:22.708][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-23 18:17:22.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:22.709][biodb::testThat]
biodb.TRACE[2025-03-23 18:17:22.711][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-23 18:17:22.711][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:22.713][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:22.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:22.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:22.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:22.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:22.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:22.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:22.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:22.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.724][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.730][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.730][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.731][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.741][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.741][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.742][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.743][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.743][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.744][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.746][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.747][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.747][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.757][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.758][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.758][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.760][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.760][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.762][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:22.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:22.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:22.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:22.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.767][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.772][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.773][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.773][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:22.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:22.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.775][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.777][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:22.777][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.777][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.778][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.801][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:22.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:22.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:22.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:22.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.847][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:22.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:22.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:22.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:22.880][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-23 18:17:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:22.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.928][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.940][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.940][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.948][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.949][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:22.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.974][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.985][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.992][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.992][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.993][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.001][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.008][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.008][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.009][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.023][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.023][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.034][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.045][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.046][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.075][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.101][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.102][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.108][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.108][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.109][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.110][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.111][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.111][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.115][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.115][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.117][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.117][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.118][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.119][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.122][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.122][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.122][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.124][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.124][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.125][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.126][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.127][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.129][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.134][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.140][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.144][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.145][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.145][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.148][ef$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:23.151][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.151][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-23 18:17:23.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.151][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:23.156][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-23 18:17:23.159][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:23.161][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.162][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:23.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-23 18:17:23.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-23 18:17:23.164][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-23 18:17:23.164][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:23.171][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:23.172][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:23.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:23.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:23.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:23.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:23.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:23.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:23.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:23.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.179][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.179][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.180][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.181][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.181][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.183][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.183][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.184][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.189][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.190][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.190][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.193][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.197][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.197][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.199][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.200][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.200][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.209][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.213][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.213][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.216][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.217][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:23.217][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:23.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.231][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:23.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:23.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.305][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-23 18:17:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-23 18:17:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-23 18:17:23.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-23 18:17:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-23 18:17:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-23 18:17:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-23 18:17:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:23.312][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.312][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-23 18:17:23.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.313][biodb::testThat]
biodb.TRACE[2025-03-23 18:17:23.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.315][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.315][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-23 18:17:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.328][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-23 18:17:23.329][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-23 18:17:23.329][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-23 18:17:23.329][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-23 18:17:23.330][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.330][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.331][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:23.331][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.331][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:23.332][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:23.332][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:23.332][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:23.333][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:23.333][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:23.333][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:23.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.338][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:23.338][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:23.338][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-23 18:17:23.343][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.343][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.343][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.344][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-23 18:17:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.356][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-23 18:17:23.374][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-23 18:17:23.375][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-23 18:17:23.375][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-23 18:17:23.379][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.380][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.380][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:23.381][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.381][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:23.388][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:23.388][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:23.388][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:23.389][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:23.389][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:23.390][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.395][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:23.395][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:23.396][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-23 18:17:23.400][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.400][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.401][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.401][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-23 18:17:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.406][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.409][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-23 18:17:23.409][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-23 18:17:23.409][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-23 18:17:23.410][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-23 18:17:23.410][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.411][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:23.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.412][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:23.412][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:23.412][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:23.413][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:23.413][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:23.413][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:23.413][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.418][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:23.418][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:23.418][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-23 18:17:23.423][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.424][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-23 18:17:23.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.424][biodb::testThat]
biodb.TRACE[2025-03-23 18:17:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.437][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-23 18:17:23.438][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-23 18:17:23.438][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-23 18:17:23.438][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.439][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.439][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:23.440][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:23.440][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:23.440][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:23.441][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:23.441][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:23.441][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:23.441][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:23.442][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:23.446][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:23.447][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-23 18:17:23.452][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.453][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-23 18:17:23.453][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.453][biodb::testThat]
biodb.TRACE[2025-03-23 18:17:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-23 18:17:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-23 18:17:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:23.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:23.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-23 18:17:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:23.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:23.486][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.487][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-23 18:17:23.487][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.487][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.490][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.490][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-23 18:17:23.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.491][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.493][biodb::testThat]
biodb.INFO [2025-03-23 18:17:23.494][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-23 18:17:23.494][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:23.494][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:23.495][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-23 18:17:25.985][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-23 18:17:26.016][biodb::testThat]
biodb.INFO [2025-03-23 18:17:26.016][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-23 18:17:26.017][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:26.017][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.067][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-23 18:17:27.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.097][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.097][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.098][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.098][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.098][ef$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:27.099][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.099][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-23 18:17:27.099][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.100][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.100][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-23 18:17:27.117][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:27.118][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.118][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:27.123][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-23 18:17:27.123][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-23 18:17:27.124][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-23 18:17:27.124][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:27.124][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.125][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:27.125][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:27.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:27.150][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-23 18:17:27.150][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-23 18:17:27.156][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.156][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-23 18:17:27.156][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.156][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.159][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-23 18:17:27.160][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-23 18:17:27.160][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:27.160][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.161][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:27.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-23 18:17:27.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-23 18:17:27.162][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-23 18:17:27.162][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:27.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.163][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:27.163][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:27.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:27.176][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-23 18:17:27.176][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-23 18:17:27.176][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-23 18:17:27.180][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.181][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-23 18:17:27.181][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.183][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.191][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.191][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-23 18:17:27.191][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.192][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.192][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.193][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.193][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:27.193][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.194][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:27.194][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:27.194][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:27.195][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:27.195][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-23 18:17:27.197][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.197][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-23 18:17:27.198][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.198][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.198][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.199][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.199][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:27.200][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.200][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:27.200][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:27.200][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:27.201][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:27.201][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-23 18:17:27.203][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.204][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.204][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.205][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.205][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.205][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.206][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.206][ef$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:27.206][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-23 18:17:27.207][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-23 18:17:27.209][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-23 18:17:27.209][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-23 18:17:27.209][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.210][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.210][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-23 18:17:27.212][biodb::testContext]
biodb.INFO [2025-03-23 18:17:27.212][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:27.212][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-23 18:17:27.213][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:27.213][biodb::testContext]
biodb.INFO [2025-03-23 18:17:27.214][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:27.215][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:27.218][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.219][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-23 18:17:27.219][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.220][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-23 18:17:27.220][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.221][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-23 18:17:27.221][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.222][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-23 18:17:27.222][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-23 18:17:27.223][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.223][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-23 18:17:27.224][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-23 18:17:27.224][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.225][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-23 18:17:27.225][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.226][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-23 18:17:27.226][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-23 18:17:27.227][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-23 18:17:27.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.227][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-23 18:17:27.228][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.228][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-23 18:17:27.229][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-23 18:17:27.229][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.230][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:27.230][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-23 18:17:27.230][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-23 18:17:27.230][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-23 18:17:27.231][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-23 18:17:27.231][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-23 18:17:27.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.232][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-23 18:17:27.232][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-23 18:17:27.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.233][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-23 18:17:27.233][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-23 18:17:27.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.234][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-23 18:17:27.234][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.235][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-23 18:17:27.235][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-23 18:17:27.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.236][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-23 18:17:27.236][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-23 18:17:27.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.237][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:27.237][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-23 18:17:27.244][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-23 18:17:27.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.245][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-23 18:17:27.246][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-23 18:17:27.246][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-23 18:17:27.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.247][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-23 18:17:27.248][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.248][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-23 18:17:27.248][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.249][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.249][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.249][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.249][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.250][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.250][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:27.250][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.250][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.251][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-23 18:17:27.253][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.253][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:27.254][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:27.255][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.255][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.255][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.256][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.256][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.256][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.256][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.257][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.257][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.257][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.258][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-23 18:17:27.258][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.258][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:27.259][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.259][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.259][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.260][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.260][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.260][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:27.260][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.261][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.261][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-23 18:17:27.261][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.261][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:27.262][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.263][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.263][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.263][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.264][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.264][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.264][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.265][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.265][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.265][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-23 18:17:27.266][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.266][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-23 18:17:27.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.267][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.267][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.267][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.268][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.268][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:27.268][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.268][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.269][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-23 18:17:27.269][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.269][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.270][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.270][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.271][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.271][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.272][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.272][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.272][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.273][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.273][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-23 18:17:27.273][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.274][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:27.274][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.274][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.275][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.275][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.275][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.275][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:27.276][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.276][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.276][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-23 18:17:27.277][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.277][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.277][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.277][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.278][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.278][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.278][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.279][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.279][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.280][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.280][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.280][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.280][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.281][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.284][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.303][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-23 18:17:27.304][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-23 18:17:27.305][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-23 18:17:27.305][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-23 18:17:27.305][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-23 18:17:27.306][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:27.306][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:27.307][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:27.307][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-23 18:17:27.307][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:27.308][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:27.308][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-23 18:17:27.309][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:27.309][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:27.309][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-23 18:17:27.310][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:27.310][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-23 18:17:27.310][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-23 18:17:27.311][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-23 18:17:27.314][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-23 18:17:27.315][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-23 18:17:27.315][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-23 18:17:27.315][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-23 18:17:27.316][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-23 18:17:27.316][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-23 18:17:27.317][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-23 18:17:27.317][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-23 18:17:27.317][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-23 18:17:27.318][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-23 18:17:27.318][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-23 18:17:27.318][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-23 18:17:27.319][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-23 18:17:27.319][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-23 18:17:27.320][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-23 18:17:27.320][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-23 18:17:27.321][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-23 18:17:27.321][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-23 18:17:27.322][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-23 18:17:27.322][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-23 18:17:27.323][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-23 18:17:27.323][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-23 18:17:27.323][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-23 18:17:27.324][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-23 18:17:27.324][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-23 18:17:27.324][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-23 18:17:27.325][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-23 18:17:27.328][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-23 18:17:27.329][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-23 18:17:27.329][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-23 18:17:27.330][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-23 18:17:27.330][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-23 18:17:27.331][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-23 18:17:27.331][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-23 18:17:27.332][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-23 18:17:27.332][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-23 18:17:27.332][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-23 18:17:27.333][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-23 18:17:27.333][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-23 18:17:27.333][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-23 18:17:27.334][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-23 18:17:27.334][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-23 18:17:27.335][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-23 18:17:27.335][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-23 18:17:27.335][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-23 18:17:27.336][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-23 18:17:27.336][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-23 18:17:27.336][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-23 18:17:27.337][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-23 18:17:27.337][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-23 18:17:27.338][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-23 18:17:27.338][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-23 18:17:27.338][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-23 18:17:27.339][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-23 18:17:27.339][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-23 18:17:27.340][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-23 18:17:27.340][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-23 18:17:27.340][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-23 18:17:27.341][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-23 18:17:27.341][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-23 18:17:27.342][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-23 18:17:27.342][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-23 18:17:27.342][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-23 18:17:27.343][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-23 18:17:27.343][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-23 18:17:27.344][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:27.344][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.344][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.345][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.378][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:27.381][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.382][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.382][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.383][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.383][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.383][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-23 18:17:27.384][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.384][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-23 18:17:27.384][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.385][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.385][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-23 18:17:27.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-23 18:17:27.386][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-23 18:17:27.387][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.387][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.387][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.387][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.388][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:27.388][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-23 18:17:27.388][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.389][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.389][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.389][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.390][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-23 18:17:27.390][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:27.391][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:27.391][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:27.392][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:27.393][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.393][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-23 18:17:27.393][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.394][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.394][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.394][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.395][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-23 18:17:27.395][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-23 18:17:27.395][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:27.395][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-23 18:17:27.395][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.396][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.396][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-23 18:17:27.396][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-23 18:17:27.396][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.397][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.397][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.397][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.397][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.398][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.398][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-23 18:17:27.398][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.399][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-23 18:17:27.399][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.399][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.400][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.401][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.401][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:27.401][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.402][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:27.402][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:27.402][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:27.403][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:27.403][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:27.404][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-23 18:17:27.406][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.406][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-23 18:17:27.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.407][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.407][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-23 18:17:27.407][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:27.408][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.408][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:27.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-23 18:17:27.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-23 18:17:27.410][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-23 18:17:27.410][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:27.411][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:27.411][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:27.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:27.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.419][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.420][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.421][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.421][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.423][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.423][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.425][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.425][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.426][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.428][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.429][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.429][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.431][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.435][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.435][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.437][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.437][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.437][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.439][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.441][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.449][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.451][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.452][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.452][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.454][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.455][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.456][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.456][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.463][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:27.541][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-23 18:17:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-23 18:17:27.546][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-23 18:17:27.546][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-23 18:17:27.547][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-23 18:17:27.547][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-23 18:17:27.547][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.548][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.548][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-23 18:17:27.550][biodb::testContext]
biodb.INFO [2025-03-23 18:17:27.550][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:27.550][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-23 18:17:27.550][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-23 18:17:27.551][biodb::testContext]
biodb.INFO [2025-03-23 18:17:27.552][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:27.553][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:27.554][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.555][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-23 18:17:27.555][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.556][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-23 18:17:27.556][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.557][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-23 18:17:27.557][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.558][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-23 18:17:27.559][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-23 18:17:27.559][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.560][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-23 18:17:27.560][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-23 18:17:27.560][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.561][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-23 18:17:27.561][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.565][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-23 18:17:27.565][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-23 18:17:27.565][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-23 18:17:27.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.566][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-23 18:17:27.567][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.568][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-23 18:17:27.568][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-23 18:17:27.568][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-23 18:17:27.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.569][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:27.569][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-23 18:17:27.570][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-23 18:17:27.570][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-23 18:17:27.570][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-23 18:17:27.570][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-23 18:17:27.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.571][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-23 18:17:27.571][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-23 18:17:27.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.572][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-23 18:17:27.573][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-23 18:17:27.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.573][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-23 18:17:27.574][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-23 18:17:27.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.575][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-23 18:17:27.575][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-23 18:17:27.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.576][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-23 18:17:27.576][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-23 18:17:27.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.577][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-23 18:17:27.577][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-23 18:17:27.582][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-23 18:17:27.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.584][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-23 18:17:27.584][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-23 18:17:27.584][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-23 18:17:27.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.585][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-23 18:17:27.586][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.586][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-23 18:17:27.586][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.587][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.587][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.587][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.587][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.588][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.588][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:27.588][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.588][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.589][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-23 18:17:27.589][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.589][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.589][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.590][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.591][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.592][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.592][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.592][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.592][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.593][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.593][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.593][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-23 18:17:27.594][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.594][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:27.594][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.595][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.595][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.595][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.596][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.599][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:27.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.600][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.600][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-23 18:17:27.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-23 18:17:27.601][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-23 18:17:27.602][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.602][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.603][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.603][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.603][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.604][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.604][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.604][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.604][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.605][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-23 18:17:27.605][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.606][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-23 18:17:27.606][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.606][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.606][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.607][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.607][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.607][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.608][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-23 18:17:27.608][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.608][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.608][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-23 18:17:27.609][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.609][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.609][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.610][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.610][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.611][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.611][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.612][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.612][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.612][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.613][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.613][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-23 18:17:27.614][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.614][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-23 18:17:27.614][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.614][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.615][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.615][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.615][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.615][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.616][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-23 18:17:27.616][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.616][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.616][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-23 18:17:27.617][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.617][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.617][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.617][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.618][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-23 18:17:27.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.618][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.619][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.619][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.620][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.620][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.620][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.621][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.621][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.644][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-23 18:17:27.644][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-23 18:17:27.644][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-23 18:17:27.645][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-23 18:17:27.645][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-23 18:17:27.645][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:27.646][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:27.646][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:27.647][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-23 18:17:27.647][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:27.647][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:27.648][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-23 18:17:27.648][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-23 18:17:27.648][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-23 18:17:27.649][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-23 18:17:27.649][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:27.649][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-23 18:17:27.650][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-23 18:17:27.650][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-23 18:17:27.651][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-23 18:17:27.651][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-23 18:17:27.651][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-23 18:17:27.652][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-23 18:17:27.652][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-23 18:17:27.652][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-23 18:17:27.653][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-23 18:17:27.653][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-23 18:17:27.653][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-23 18:17:27.654][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-23 18:17:27.654][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-23 18:17:27.655][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-23 18:17:27.658][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-23 18:17:27.658][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-23 18:17:27.659][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-23 18:17:27.659][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-23 18:17:27.660][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-23 18:17:27.660][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-23 18:17:27.660][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-23 18:17:27.661][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-23 18:17:27.661][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-23 18:17:27.662][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-23 18:17:27.662][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-23 18:17:27.662][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-23 18:17:27.663][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-23 18:17:27.664][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-23 18:17:27.664][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-23 18:17:27.665][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-23 18:17:27.665][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-23 18:17:27.665][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-23 18:17:27.666][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-23 18:17:27.666][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-23 18:17:27.667][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-23 18:17:27.667][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-23 18:17:27.667][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-23 18:17:27.668][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-23 18:17:27.668][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-23 18:17:27.669][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-23 18:17:27.669][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-23 18:17:27.669][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-23 18:17:27.670][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-23 18:17:27.670][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-23 18:17:27.670][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-23 18:17:27.671][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-23 18:17:27.671][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-23 18:17:27.671][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-23 18:17:27.672][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-23 18:17:27.672][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-23 18:17:27.673][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-23 18:17:27.673][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-23 18:17:27.673][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-23 18:17:27.674][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-23 18:17:27.674][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-23 18:17:27.674][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-23 18:17:27.675][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-23 18:17:27.675][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-23 18:17:27.675][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-23 18:17:27.676][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-23 18:17:27.676][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-23 18:17:27.677][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-23 18:17:27.677][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-23 18:17:27.677][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-23 18:17:27.678][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-23 18:17:27.678][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-23 18:17:27.678][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-23 18:17:27.679][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-23 18:17:27.679][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-23 18:17:27.679][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.680][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-23 18:17:27.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.710][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-23 18:17:27.710][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.711][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.711][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.711][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.712][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-23 18:17:27.712][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.712][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-23 18:17:27.712][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.713][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.715][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-23 18:17:27.716][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-23 18:17:27.716][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.716][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-23 18:17:27.716][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-23 18:17:27.717][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-23 18:17:27.718][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-23 18:17:27.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.718][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-23 18:17:27.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-23 18:17:27.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-23 18:17:27.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-23 18:17:27.719][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:27.719][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-23 18:17:27.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.720][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-23 18:17:27.720][self$setPropertyValue]
biodb.DEBUG[2025-03-23 18:17:27.721][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-23 18:17:27.721][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-23 18:17:27.721][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-23 18:17:27.722][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-23 18:17:27.722][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-23 18:17:27.723][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.724][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-23 18:17:27.724][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.724][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.725][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-23 18:17:27.726][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-23 18:17:27.726][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-23 18:17:27.726][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-23 18:17:27.726][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-23 18:17:27.726][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-23 18:17:27.727][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-23 18:17:27.727][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-23 18:17:27.727][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-23 18:17:27.727][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.728][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.728][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.728][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-23 18:17:27.729][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-23 18:17:27.729][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-23 18:17:27.729][biodb::testThat]
biodb.INFO [2025-03-23 18:17:27.730][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-23 18:17:27.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-23 18:17:27.730][biodb::testThat]
biodb.DEBUG[2025-03-23 18:17:27.731][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-23 18:17:27.731][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-23 18:17:27.731][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-23 18:17:27.732][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.733][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.733][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:27.733][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.734][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:27.734][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:27.734][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:27.735][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:27.735][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:27.735][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:27.735][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-23 18:17:27.736][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-23 18:17:27.736][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:27.740][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.740][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:27.741][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-23 18:17:27.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-23 18:17:27.742][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-23 18:17:27.742][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:27.742][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:27.743][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:27.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:27.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.754][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.754][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.754][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.756][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.756][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.758][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.758][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.759][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.763][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.763][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.763][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.765][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.771][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.772][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.774][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.776][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.778][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.783][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.784][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.785][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.786][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.787][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.787][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.791][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.791][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.823][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:27.880][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-23 18:17:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:27.884][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:27.884][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:27.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:27.892][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-23 18:17:27.892][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-23 18:17:27.893][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:27.893][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-23 18:17:27.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-23 18:17:27.894][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-23 18:17:27.895][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-23 18:17:27.895][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-23 18:17:27.896][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-23 18:17:27.896][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-23 18:17:27.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:27.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:27.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:27.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:27.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:27.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:27.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:27.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.906][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.906][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.907][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.908][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.908][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.909][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.910][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.910][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.913][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.914][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.915][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.915][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.921][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.923][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.923][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.925][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.927][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.934][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.937][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.938][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.939][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.941][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.943][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.943][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-23 18:17:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:27.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-23 18:17:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.951][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-23 18:17:27.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-23 18:17:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-23 18:17:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-23 18:17:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-23 18:17:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-23 18:17:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-23 18:17:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-23 18:17:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-23 18:17:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-23 18:17:27.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-23 18:17:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-23 18:17:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-23 18:17:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-23 18:17:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:28.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-23 18:17:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-23 18:17:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-23 18:17:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-23 18:17:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:28.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-23 18:17:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-23 18:17:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-23 18:17:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-23 18:17:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-23 18:17:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.030][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-23 18:17:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.034][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:28.034][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:28.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:28.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:28.039][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-23 18:17:28.039][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-23 18:17:28.039][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-23 18:17:28.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.040][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:28.041][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.041][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:28.041][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:28.042][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:28.042][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:28.042][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:28.042][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:28.043][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.050][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:28.050][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:28.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:28.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.062][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-23 18:17:28.062][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:28.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:28.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-23 18:17:28.066][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-23 18:17:28.066][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-23 18:17:28.067][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-23 18:17:28.067][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.067][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.068][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-23 18:17:28.068][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-23 18:17:28.068][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-23 18:17:28.069][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-23 18:17:28.069][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-23 18:17:28.069][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-23 18:17:28.069][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-23 18:17:28.070][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-23 18:17:28.070][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-23 18:17:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.075][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.077][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-23 18:17:28.077][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-23 18:17:28.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:28.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-23 18:17:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-23 18:17:28.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-23 18:17:28.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-23 18:17:28.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-23 18:17:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-23 18:17:28.088][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-23 18:17:28.088][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-23 18:17:28.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-23 18:17:28.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-23 18:17:28.093][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-23 18:17:28.093][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-23 18:17:28.094][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-23 18:17:28.094][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-23 18:17:28.094][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-23 18:17:28.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-23 18:17:28.095][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-23 18:17:28.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-23 18:17:28.095][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-23 18:17:28.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.682   0.179   6.440

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings