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###
### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL apeglm
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'apeglm' ...
** this is package 'apeglm' version '1.29.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from RcppExports.cpp:4:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c betabinGLM.cpp -o betabinGLM.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/RcppNumerical.h:10,
from betabinGLM.cpp:4:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/Func.h:18:35: required from here
18 | typedef Eigen::Ref<Eigen::VectorXd> Refvec;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/Func.h:18:35: required from here
18 | typedef Eigen::Ref<Eigen::VectorXd> Refvec;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, -1, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:636:45: required from 'class Numer::Integrator<double>'
636 | Eigen::Array<Scalar, Eigen::Dynamic, 1> m_lowerList;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:67:29: required from here
67 | const Integrator<double>::QuadratureRule rule = Integrator<double>::GaussKronrod41
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:188:50: required from here
188 | const Eigen::Map<const Eigen::VectorXd> xval(x, *ndim);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:329:77: required from 'class Eigen::Ref<const Eigen::Matrix<double, -1, 1> >'
329 | template<typename TPlainObjectType, int Options, typename StrideType> class Ref<const TPlainObjectType, Options, StrideType>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:189:26: required from here
189 | *f = func->operator()(xval);
| ~~~~~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:27: required from here
205 | scalefac((upper - lower).prod()),
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:212:51: required from here
212 | scalex.noalias() = lb + range.cwiseProduct(x);
| ~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:212:53: required from here
212 | scalex.noalias() = lb + range.cwiseProduct(x);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:281:76: required from 'class Eigen::Ref<Eigen::Matrix<double, -1, 1> >'
281 | template<typename PlainObjectType, int Options, typename StrideType> class Ref
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:25:24: required from here
25 | return f.f_grad(x, grad);
| ~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:36:12: required from 'class LBFGSpp::BFGSMat<double, false>'
36 | Matrix m_s; // History of the s vectors
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:30:21: required from 'class LBFGSpp::LBFGSSolver<double>'
30 | BFGSMat<Scalar> m_bfgs; // Approximation to the Hessian matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:50:46: required from here
50 | LBFGSpp::LBFGSSolver<double> solver(param);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
betabinGLM.cpp:20:10: required from here
20 | MapMat x;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
betabinGLM.cpp:23:10: required from here
23 | MapVec thetas;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:42:45: required from here
42 | Eigen::ArrayXd exp_neg_xbeta = xbeta.exp().inverse();
| ~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:42:55: required from here
42 | Eigen::ArrayXd exp_neg_xbeta = xbeta.exp().inverse();
| ~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:43:38: required from here
43 | exp_neg_xbeta = exp_neg_xbeta.max(lbd).min(ubd);
| ~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:43:38: required from here
43 | exp_neg_xbeta = exp_neg_xbeta.max(lbd).min(ubd);
| ~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:43:47: required from here
43 | exp_neg_xbeta = exp_neg_xbeta.max(lbd).min(ubd);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:44:30: required from here
44 | Eigen::ArrayXd prob = (1+exp_neg_xbeta).inverse();
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:44:30: required from here
44 | Eigen::ArrayXd prob = (1+exp_neg_xbeta).inverse();
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:44:52: required from here
44 | Eigen::ArrayXd prob = (1+exp_neg_xbeta).inverse();
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:46:35: required from here
46 | Eigen::ArrayXd thetap = theta*prob;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
betabinGLM.cpp:47:36: required from here
47 | Eigen::ArrayXd size = sizes.col(i);
| ~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:51:32: required from here
51 | Eigen::ArrayXd e1 = size - y + theta - thetap;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:51:36: required from here
51 | Eigen::ArrayXd e1 = size - y + theta - thetap;
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:51:44: required from here
51 | Eigen::ArrayXd e1 = size - y + theta - thetap;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:52:29: required from here
52 | Eigen::ArrayXd e2 = y + thetap;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:53:33: required from here
53 | Eigen::ArrayXd e3 = theta - thetap;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:54:41: required from here
54 | Eigen::ArrayXd lik_parts = e1.lgamma() +
| ~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:55:42: required from here
55 | e2.lgamma() -
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:56:42: required from here
56 | e3.lgamma() -
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_lgamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:57:46: required from here
57 | thetap.lgamma();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:58:49: required from here
58 | Eigen::ArrayXd weighted_parts = lik_parts * weight;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:61:48: required from here
61 | Eigen::ArrayXd e4 = theta*exp_neg_xbeta/pow(1+exp_neg_xbeta, 2);
| ~~~^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:61:67: required from here
61 | Eigen::ArrayXd e4 = theta*exp_neg_xbeta/pow(1+exp_neg_xbeta, 2);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:62:41: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
betabinGLM.cpp:62:42: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:62:55: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:62:68: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:62:85: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:62:86: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_digamma_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:62:88: required from here
62 | Eigen::VectorXd e5 = e4*(-e1.digamma()+e2.digamma()+e3.digamma()-thetap.digamma())*weight;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
betabinGLM.cpp:63:48: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:63:49: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:63:49: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1, -1, -1>'
178 | class Matrix
| ^~~~~~
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
betabinGLM.cpp:87:38: required from here
87 | grad = (d_neg_obs + d_neg_prior)/cn;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
betabinGLM.cpp:131:14: required from here
131 | betas.col(i) = beta;
| ~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:106:27: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
106 | m_drt.noalias() = -m_grad;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:159:32: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
159 | vecs.noalias() = x - m_xp;
| ~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 8>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 8, 1, 0, 8, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 8, 1, 0, 8, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:189:28: required from 'class Numer::QuadratureKronrod<double>'
189 | Eigen::Array<Scalar, 8, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 8, 1, 0, 8, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:189:28: required from 'class Numer::QuadratureKronrod<double>'
189 | Eigen::Array<Scalar, 8, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 4, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 4, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:215:28: required from 'class Numer::QuadratureKronrod<double>'
215 | Eigen::Array<Scalar, 4, 1> QuadratureKronrod<Scalar>::abscissaeGauss15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 11>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 11, 1, 0, 11, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 11, 1, 0, 11, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 11, 1, 0, 11, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:235:29: required from 'class Numer::QuadratureKronrod<double>'
235 | Eigen::Array<Scalar, 11, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 11, 1, 0, 11, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:235:29: required from 'class Numer::QuadratureKronrod<double>'
235 | Eigen::Array<Scalar, 11, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 5>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 5, 1, 0, 5, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 5, 1, 0, 5, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 5, 1, 0, 5, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:267:28: required from 'class Numer::QuadratureKronrod<double>'
267 | Eigen::Array<Scalar, 5, 1> QuadratureKronrod<Scalar>::abscissaeGauss21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 5, 1, 0, 5, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:267:28: required from 'class Numer::QuadratureKronrod<double>'
267 | Eigen::Array<Scalar, 5, 1> QuadratureKronrod<Scalar>::abscissaeGauss21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 16>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 16, 1, 0, 16, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 16, 1, 0, 16, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 16, 1, 0, 16, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:289:29: required from 'class Numer::QuadratureKronrod<double>'
289 | Eigen::Array<Scalar, 16, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod31 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 16, 1, 0, 16, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:289:29: required from 'class Numer::QuadratureKronrod<double>'
289 | Eigen::Array<Scalar, 16, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod31 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 21>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 21, 1, 0, 21, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 21, 1, 0, 21, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 21, 1, 0, 21, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:359:29: required from 'class Numer::QuadratureKronrod<double>'
359 | Eigen::Array<Scalar, 21, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 21, 1, 0, 21, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:359:29: required from 'class Numer::QuadratureKronrod<double>'
359 | Eigen::Array<Scalar, 21, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 10>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 10, 1, 0, 10, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 10, 1, 0, 10, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 10, 1, 0, 10, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:411:29: required from 'class Numer::QuadratureKronrod<double>'
411 | Eigen::Array<Scalar, 10, 1> QuadratureKronrod<Scalar>::abscissaeGauss41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 10, 1, 0, 10, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:411:29: required from 'class Numer::QuadratureKronrod<double>'
411 | Eigen::Array<Scalar, 10, 1> QuadratureKronrod<Scalar>::abscissaeGauss41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 26>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 26, 1, 0, 26, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 26, 1, 0, 26, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 26, 1, 0, 26, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:443:29: required from 'class Numer::QuadratureKronrod<double>'
443 | Eigen::Array<Scalar, 26, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 26, 1, 0, 26, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:443:29: required from 'class Numer::QuadratureKronrod<double>'
443 | Eigen::Array<Scalar, 26, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 13>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 13, 1, 0, 13, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 13, 1, 0, 13, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 13, 1, 0, 13, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:505:29: required from 'class Numer::QuadratureKronrod<double>'
505 | Eigen::Array<Scalar, 13, 1> QuadratureKronrod<Scalar>::abscissaeGauss51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 13, 1, 0, 13, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:505:29: required from 'class Numer::QuadratureKronrod<double>'
505 | Eigen::Array<Scalar, 13, 1> QuadratureKronrod<Scalar>::abscissaeGauss51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 31>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 31, 1, 0, 31, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 31, 1, 0, 31, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 31, 1, 0, 31, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:543:29: required from 'class Numer::QuadratureKronrod<double>'
543 | Eigen::Array<Scalar, 31, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 31, 1, 0, 31, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:543:29: required from 'class Numer::QuadratureKronrod<double>'
543 | Eigen::Array<Scalar, 31, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 15>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 15, 1, 0, 15, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 15, 1, 0, 15, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 15, 1, 0, 15, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:615:29: required from 'class Numer::QuadratureKronrod<double>'
615 | Eigen::Array<Scalar, 15, 1> QuadratureKronrod<Scalar>::abscissaeGauss61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 15, 1, 0, 15, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:615:29: required from 'class Numer::QuadratureKronrod<double>'
615 | Eigen::Array<Scalar, 15, 1> QuadratureKronrod<Scalar>::abscissaeGauss61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 36>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 36, 1, 0, 36, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 36, 1, 0, 36, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 36, 1, 0, 36, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:657:29: required from 'class Numer::QuadratureKronrod<double>'
657 | Eigen::Array<Scalar, 36, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 36, 1, 0, 36, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:657:29: required from 'class Numer::QuadratureKronrod<double>'
657 | Eigen::Array<Scalar, 36, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 18>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 18, 1, 0, 18, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 18, 1, 0, 18, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 18, 1, 0, 18, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:739:29: required from 'class Numer::QuadratureKronrod<double>'
739 | Eigen::Array<Scalar, 18, 1> QuadratureKronrod<Scalar>::abscissaeGauss71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 18, 1, 0, 18, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:739:29: required from 'class Numer::QuadratureKronrod<double>'
739 | Eigen::Array<Scalar, 18, 1> QuadratureKronrod<Scalar>::abscissaeGauss71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 41>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 41, 1, 0, 41, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 41, 1, 0, 41, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 41, 1, 0, 41, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:787:29: required from 'class Numer::QuadratureKronrod<double>'
787 | Eigen::Array<Scalar, 41, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 41, 1, 0, 41, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:787:29: required from 'class Numer::QuadratureKronrod<double>'
787 | Eigen::Array<Scalar, 41, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 20>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 20, 1, 0, 20, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 20, 1, 0, 20, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 20, 1, 0, 20, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:879:29: required from 'class Numer::QuadratureKronrod<double>'
879 | Eigen::Array<Scalar, 20, 1> QuadratureKronrod<Scalar>::abscissaeGauss81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 20, 1, 0, 20, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:879:29: required from 'class Numer::QuadratureKronrod<double>'
879 | Eigen::Array<Scalar, 20, 1> QuadratureKronrod<Scalar>::abscissaeGauss81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 46>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 46, 1, 0, 46, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 46, 1, 0, 46, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 46, 1, 0, 46, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:931:29: required from 'class Numer::QuadratureKronrod<double>'
931 | Eigen::Array<Scalar, 46, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 46, 1, 0, 46, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:931:29: required from 'class Numer::QuadratureKronrod<double>'
931 | Eigen::Array<Scalar, 46, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 23>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 23, 1, 0, 23, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 23, 1, 0, 23, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 23, 1, 0, 23, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1033:29: required from 'class Numer::QuadratureKronrod<double>'
1033 | Eigen::Array<Scalar, 23, 1> QuadratureKronrod<Scalar>::abscissaeGauss91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 23, 1, 0, 23, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1033:29: required from 'class Numer::QuadratureKronrod<double>'
1033 | Eigen::Array<Scalar, 23, 1> QuadratureKronrod<Scalar>::abscissaeGauss91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 51>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 51, 1, 0, 51, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 51, 1, 0, 51, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 51, 1, 0, 51, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1091:29: required from 'class Numer::QuadratureKronrod<double>'
1091 | Eigen::Array<Scalar, 51, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 51, 1, 0, 51, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1091:29: required from 'class Numer::QuadratureKronrod<double>'
1091 | Eigen::Array<Scalar, 51, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 25>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 25, 1, 0, 25, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 25, 1, 0, 25, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 25, 1, 0, 25, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1203:29: required from 'class Numer::QuadratureKronrod<double>'
1203 | Eigen::Array<Scalar, 25, 1> QuadratureKronrod<Scalar>::abscissaeGauss101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 25, 1, 0, 25, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1203:29: required from 'class Numer::QuadratureKronrod<double>'
1203 | Eigen::Array<Scalar, 25, 1> QuadratureKronrod<Scalar>::abscissaeGauss101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 61>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 61, 1, 0, 61, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 61, 1, 0, 61, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 61, 1, 0, 61, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1265:29: required from 'class Numer::QuadratureKronrod<double>'
1265 | Eigen::Array<Scalar, 61, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 61, 1, 0, 61, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1265:29: required from 'class Numer::QuadratureKronrod<double>'
1265 | Eigen::Array<Scalar, 61, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 30>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 30, 1, 0, 30, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 30, 1, 0, 30, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 30, 1, 0, 30, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1397:29: required from 'class Numer::QuadratureKronrod<double>'
1397 | Eigen::Array<Scalar, 30, 1> QuadratureKronrod<Scalar>::abscissaeGauss121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 30, 1, 0, 30, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1397:29: required from 'class Numer::QuadratureKronrod<double>'
1397 | Eigen::Array<Scalar, 30, 1> QuadratureKronrod<Scalar>::abscissaeGauss121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 101>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 101, 1, 0, 101, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 101, 1, 0, 101, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 101, 1, 0, 101, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1469:30: required from 'class Numer::QuadratureKronrod<double>'
1469 | Eigen::Array<Scalar, 101, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 101, 1, 0, 101, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1469:30: required from 'class Numer::QuadratureKronrod<double>'
1469 | Eigen::Array<Scalar, 101, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 50>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 50, 1, 0, 50, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 50, 1, 0, 50, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 50, 1, 0, 50, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1681:29: required from 'class Numer::QuadratureKronrod<double>'
1681 | Eigen::Array<Scalar, 50, 1> QuadratureKronrod<Scalar>::abscissaeGauss201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 50, 1, 0, 50, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1681:29: required from 'class Numer::QuadratureKronrod<double>'
1681 | Eigen::Array<Scalar, 50, 1> QuadratureKronrod<Scalar>::abscissaeGauss201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:887:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:497:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::prod() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
497 | return derived().redux(Eigen::internal::scalar_product_op<Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:38: required from here
205 | scalefac((upper - lower).prod()),
| ~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:37: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:37: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:30: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:161:56: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
161 | if (vecs.dot(vecy) > eps * vecy.squaredNorm())
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:37: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:56: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:59: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:29: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<Eigen::Matrix<double, -1, 1> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:82: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:329:77: required from 'class Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >'
329 | template<typename TPlainObjectType, int Options, typename StrideType> class Ref<const TPlainObjectType, Options, StrideType>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:163:41: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
163 | res.noalias() -= m_alpha[j] * m_y.col(j);
| ~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 7>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 7, 1, 0, 7, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 7, 1, 0, 7, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 8, 1, 0, 8, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 11, 1, 0, 11, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 16, 1, 0, 16, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 21, 1, 0, 21, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 26, 1, 0, 26, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 31, 1, 0, 31, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 71>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 71, 1, 0, 71, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 71, 1, 0, 71, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 71, 1, 0, 71, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 71, 1, 0, 71, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 35>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 35, 1, 0, 35, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 35, 1, 0, 35, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 36, 1, 0, 36, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 81>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 81, 1, 0, 81, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 81, 1, 0, 81, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 81, 1, 0, 81, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 81, 1, 0, 81, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 40>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 40, 1, 0, 40, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 40, 1, 0, 40, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 41, 1, 0, 41, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 91>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 91, 1, 0, 91, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 91, 1, 0, 91, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 91, 1, 0, 91, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 91, 1, 0, 91, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 45>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 45, 1, 0, 45, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 45, 1, 0, 45, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 46, 1, 0, 46, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 51, 1, 0, 51, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 121>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 121, 1, 0, 121, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 121, 1, 0, 121, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 121, 1, 0, 121, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 121, 1, 0, 121, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 60>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 60, 1, 0, 60, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 60, 1, 0, 60, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 61, 1, 0, 61, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 201>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 201, 1, 0, 201, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 201, 1, 0, 201, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 201, 1, 0, 201, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 201, 1, 0, 201, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 100>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 100, 1, 0, 100, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 100, 1, 0, 100, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 101, 1, 0, 101, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:74:32: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::reset(int, int) [with Scalar = double; bool LBFGSB = false]'
74 | m_permMinv.diagonal().setOnes();
| ~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:43:21: required from 'void LBFGSpp::LBFGSSolver<Scalar, LineSearch>::reset(int) [with Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright]'
43 | m_bfgs.reset(n, m);
| ~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:85:9: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
85 | reset(n);
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:123:35: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
123 | Scalar dg = m_grad.dot(m_drt);
| ~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:20:67: required from 'Derived& Eigen::DenseBase<Derived>::operator*=(const Scalar&) [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:141:50: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
141 | m_permMinv.block(m_m, m_m, m_m, m_m) *= m_theta;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from 'Derived& Eigen::DenseBase<Derived>::operator/=(const Scalar&) [with Derived = Eigen::Matrix<double, -1, 1>; Scalar = double]'
41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:167:13: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
167 | res /= m_theta;
| ~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; Func = Eigen::internal::scalar_product_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:497:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::prod() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
497 | return derived().redux(Eigen::internal::scalar_product_op<Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:38: required from here
205 | scalefac((upper - lower).prod()),
| ~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1018:71: required from 'struct Eigen::internal::evaluator<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
1018 | Flags = evaluator<Map<PlainObjectType, RefOptions, StrideType> >::Flags,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Functor = assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; ExpressionType = Eigen::Matrix<double, -1, 1>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:54:20: required from here
54 | xx.noalias() = x;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:87:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
87 | const Scalar ys = m_s.col(loc).dot(m_y.col(loc));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:91: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:83: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 2> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 2> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 2>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:361:50: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
361 | Eigen::Matrix<Scalar, Eigen::Dynamic, 2> X(ldim, 2);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:14: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:33: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:39: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:81: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:92: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:103: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:162:40: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_alpha[j] = m_s.col(j).dot(res) / m_ys[j];
| ~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Array<double, -1, 1>; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array<double, -1, 1>; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Array<double, -1, 1> >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
betabinGLM.cpp:59:45: required from here
59 | double neg_obs = -1 * weighted_parts.sum(); //beta-binomial negative log-likelihood
| ~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:277:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from 'struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, Eigen::internal::IndexBased, double>'
564 | CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<UnaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:161:56: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
161 | if (vecs.dot(vecy) > eps * vecy.squaredNorm())
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; ExpressionType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:68: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array<double, -1, 1>; SrcXprType = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array<double, -1, 1>; SrcXprType = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:47:38: required from here
47 | Eigen::ArrayXd size = sizes.col(i);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:123:35: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
123 | Scalar dg = m_grad.dot(m_drt);
| ~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from 'struct Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>'
369 | typedef typename nested_eval<Lhs,1>::type LhsNested;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:87:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
87 | const Scalar ys = m_s.col(loc).dot(m_y.col(loc));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:64: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; ExpressionType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:28: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:64: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:162:40: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_alpha[j] = m_s.col(j).dot(res) / m_ys[j];
| ~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:333:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:87:38: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
87 | typedef typename Traits::LhsPacket LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:91:42: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
91 | typedef typename HalfTraits::LhsPacket LhsPacketHalf;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 2>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:95:45: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
95 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >'
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
296 | dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size());
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:41:32: required from here
41 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; Derived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
betabinGLM.cpp:63:53: required from here
63 | Eigen::ArrayXd d_neg_obs = -1 * x.transpose() * e5; //beta-binomial gradient
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nbinomGLM.cpp -o nbinomGLM.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/RcppNumerical.h:10,
from nbinomGLM.cpp:4:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/Func.h:18:35: required from here
18 | typedef Eigen::Ref<Eigen::VectorXd> Refvec;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/Func.h:18:35: required from here
18 | typedef Eigen::Ref<Eigen::VectorXd> Refvec;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, -1, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:636:45: required from 'class Numer::Integrator<double>'
636 | Eigen::Array<Scalar, Eigen::Dynamic, 1> m_lowerList;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:67:29: required from here
67 | const Integrator<double>::QuadratureRule rule = Integrator<double>::GaussKronrod41
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:188:50: required from here
188 | const Eigen::Map<const Eigen::VectorXd> xval(x, *ndim);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:329:77: required from 'class Eigen::Ref<const Eigen::Matrix<double, -1, 1> >'
329 | template<typename TPlainObjectType, int Options, typename StrideType> class Ref<const TPlainObjectType, Options, StrideType>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:189:26: required from here
189 | *f = func->operator()(xval);
| ~~~~~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:27: required from here
205 | scalefac((upper - lower).prod()),
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:212:51: required from here
212 | scalex.noalias() = lb + range.cwiseProduct(x);
| ~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:212:53: required from here
212 | scalex.noalias() = lb + range.cwiseProduct(x);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:281:76: required from 'class Eigen::Ref<Eigen::Matrix<double, -1, 1> >'
281 | template<typename PlainObjectType, int Options, typename StrideType> class Ref
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:25:24: required from here
25 | return f.f_grad(x, grad);
| ~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:36:12: required from 'class LBFGSpp::BFGSMat<double, false>'
36 | Matrix m_s; // History of the s vectors
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:30:21: required from 'class LBFGSpp::LBFGSSolver<double>'
30 | BFGSMat<Scalar> m_bfgs; // Approximation to the Hessian matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:50:46: required from here
50 | LBFGSpp::LBFGSSolver<double> solver(param);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
nbinomGLM.cpp:13:16: required from here
13 | const MapMat x;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
nbinomGLM.cpp:15:16: required from here
15 | const MapVec size;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
nbinomGLM.cpp:33:50: required from here
33 | Eigen::ArrayXd xbeta_off = xbeta + offset.col(i).array();
| ~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >'
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
nbinomGLM.cpp:33:59: required from here
33 | Eigen::ArrayXd xbeta_off = xbeta + offset.col(i).array();
| ~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:33:60: required from here
33 | Eigen::ArrayXd xbeta_off = xbeta + offset.col(i).array();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
nbinomGLM.cpp:34:49: required from here
34 | Eigen::ArrayXd exp_xbeta_off = xbeta_off.exp();
| ~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:36:49: required from here
36 | Eigen::ArrayXd a = Y.col(i).array() + size[i];
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:36:49: required from here
36 | Eigen::ArrayXd a = Y.col(i).array() + size[i];
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:37:46: required from here
37 | Eigen::ArrayXd b = exp_xbeta_off + size[i];
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:39:48: required from here
39 | Eigen::VectorXd c = Y.col(i).array() - a * exp_xbeta_off * b.inverse();
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
nbinomGLM.cpp:39:73: required from here
39 | Eigen::VectorXd c = Y.col(i).array() - a * exp_xbeta_off * b.inverse();
| ~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:39:74: required from here
39 | Eigen::VectorXd c = Y.col(i).array() - a * exp_xbeta_off * b.inverse();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:39:74: required from here
39 | Eigen::VectorXd c = Y.col(i).array() - a * exp_xbeta_off * b.inverse();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
nbinomGLM.cpp:40:33: required from here
40 | Eigen::VectorXd cw = c.array() * weights.col(i).array();
| ~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:40:59: required from here
40 | Eigen::VectorXd cw = c.array() * weights.col(i).array();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:42:43: required from here
42 | Eigen::ArrayXd d = Y.col(i).array() * xbeta - a * b.log();
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
nbinomGLM.cpp:42:60: required from here
42 | Eigen::ArrayXd d = Y.col(i).array() * xbeta - a * b.log();
| ~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:42:61: required from here
42 | Eigen::ArrayXd d = Y.col(i).array() * xbeta - a * b.log();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:42:61: required from here
42 | Eigen::ArrayXd d = Y.col(i).array() * xbeta - a * b.log();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:43:50: required from here
43 | Eigen::ArrayXd dw = d * weights.col(i).array();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
nbinomGLM.cpp:67:50: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:67:51: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:67:51: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1, -1, -1>'
178 | class Matrix
| ^~~~~~
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:68:30: required from here
68 | grad = d_neg_lik / cnst[i] + d_neg_prior / cnst[i];
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
nbinomGLM.cpp:68:54: required from here
68 | grad = d_neg_lik / cnst[i] + d_neg_prior / cnst[i];
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
nbinomGLM.cpp:117:14: required from here
117 | betas.col(i) = beta;
| ~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:106:27: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
106 | m_drt.noalias() = -m_grad;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:159:32: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
159 | vecs.noalias() = x - m_xp;
| ~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 8>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 8, 1, 0, 8, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 8, 1, 0, 8, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:189:28: required from 'class Numer::QuadratureKronrod<double>'
189 | Eigen::Array<Scalar, 8, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 8, 1, 0, 8, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 8, 1, 0, 8, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 8, 1, 0, 8, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:189:28: required from 'class Numer::QuadratureKronrod<double>'
189 | Eigen::Array<Scalar, 8, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 4, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 4, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:215:28: required from 'class Numer::QuadratureKronrod<double>'
215 | Eigen::Array<Scalar, 4, 1> QuadratureKronrod<Scalar>::abscissaeGauss15 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 11>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 11, 1, 0, 11, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 11, 1, 0, 11, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 11, 1, 0, 11, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:235:29: required from 'class Numer::QuadratureKronrod<double>'
235 | Eigen::Array<Scalar, 11, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 11, 1, 0, 11, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 11, 1, 0, 11, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 11, 1, 0, 11, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:235:29: required from 'class Numer::QuadratureKronrod<double>'
235 | Eigen::Array<Scalar, 11, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 5>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 5, 1, 0, 5, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 5, 1, 0, 5, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 5, 1, 0, 5, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:267:28: required from 'class Numer::QuadratureKronrod<double>'
267 | Eigen::Array<Scalar, 5, 1> QuadratureKronrod<Scalar>::abscissaeGauss21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 5, 1, 0, 5, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 5, 1, 0, 5, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 5, 1, 0, 5, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:267:28: required from 'class Numer::QuadratureKronrod<double>'
267 | Eigen::Array<Scalar, 5, 1> QuadratureKronrod<Scalar>::abscissaeGauss21 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 16>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 16, 1, 0, 16, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 16, 1, 0, 16, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 16, 1, 0, 16, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:289:29: required from 'class Numer::QuadratureKronrod<double>'
289 | Eigen::Array<Scalar, 16, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod31 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 16, 1, 0, 16, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 16, 1, 0, 16, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 16, 1, 0, 16, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:289:29: required from 'class Numer::QuadratureKronrod<double>'
289 | Eigen::Array<Scalar, 16, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod31 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 21>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 21, 1, 0, 21, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 21, 1, 0, 21, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 21, 1, 0, 21, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:359:29: required from 'class Numer::QuadratureKronrod<double>'
359 | Eigen::Array<Scalar, 21, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 21, 1, 0, 21, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 21, 1, 0, 21, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 21, 1, 0, 21, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:359:29: required from 'class Numer::QuadratureKronrod<double>'
359 | Eigen::Array<Scalar, 21, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 10>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 10, 1, 0, 10, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 10, 1, 0, 10, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 10, 1, 0, 10, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:411:29: required from 'class Numer::QuadratureKronrod<double>'
411 | Eigen::Array<Scalar, 10, 1> QuadratureKronrod<Scalar>::abscissaeGauss41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 10, 1, 0, 10, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 10, 1, 0, 10, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 10, 1, 0, 10, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:411:29: required from 'class Numer::QuadratureKronrod<double>'
411 | Eigen::Array<Scalar, 10, 1> QuadratureKronrod<Scalar>::abscissaeGauss41 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 26>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 26, 1, 0, 26, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 26, 1, 0, 26, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 26, 1, 0, 26, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:443:29: required from 'class Numer::QuadratureKronrod<double>'
443 | Eigen::Array<Scalar, 26, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 26, 1, 0, 26, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 26, 1, 0, 26, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 26, 1, 0, 26, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:443:29: required from 'class Numer::QuadratureKronrod<double>'
443 | Eigen::Array<Scalar, 26, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 13>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 13, 1, 0, 13, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 13, 1, 0, 13, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 13, 1, 0, 13, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:505:29: required from 'class Numer::QuadratureKronrod<double>'
505 | Eigen::Array<Scalar, 13, 1> QuadratureKronrod<Scalar>::abscissaeGauss51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 13, 1, 0, 13, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 13, 1, 0, 13, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 13, 1, 0, 13, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:505:29: required from 'class Numer::QuadratureKronrod<double>'
505 | Eigen::Array<Scalar, 13, 1> QuadratureKronrod<Scalar>::abscissaeGauss51 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 31>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 31, 1, 0, 31, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 31, 1, 0, 31, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 31, 1, 0, 31, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:543:29: required from 'class Numer::QuadratureKronrod<double>'
543 | Eigen::Array<Scalar, 31, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 31, 1, 0, 31, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 31, 1, 0, 31, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 31, 1, 0, 31, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:543:29: required from 'class Numer::QuadratureKronrod<double>'
543 | Eigen::Array<Scalar, 31, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 15>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 15, 1, 0, 15, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 15, 1, 0, 15, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 15, 1, 0, 15, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:615:29: required from 'class Numer::QuadratureKronrod<double>'
615 | Eigen::Array<Scalar, 15, 1> QuadratureKronrod<Scalar>::abscissaeGauss61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 15, 1, 0, 15, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 15, 1, 0, 15, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 15, 1, 0, 15, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:615:29: required from 'class Numer::QuadratureKronrod<double>'
615 | Eigen::Array<Scalar, 15, 1> QuadratureKronrod<Scalar>::abscissaeGauss61 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 36>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 36, 1, 0, 36, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 36, 1, 0, 36, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 36, 1, 0, 36, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:657:29: required from 'class Numer::QuadratureKronrod<double>'
657 | Eigen::Array<Scalar, 36, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 36, 1, 0, 36, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 36, 1, 0, 36, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 36, 1, 0, 36, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:657:29: required from 'class Numer::QuadratureKronrod<double>'
657 | Eigen::Array<Scalar, 36, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 18>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 18, 1, 0, 18, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 18, 1, 0, 18, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 18, 1, 0, 18, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:739:29: required from 'class Numer::QuadratureKronrod<double>'
739 | Eigen::Array<Scalar, 18, 1> QuadratureKronrod<Scalar>::abscissaeGauss71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 18, 1, 0, 18, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 18, 1, 0, 18, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 18, 1, 0, 18, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:739:29: required from 'class Numer::QuadratureKronrod<double>'
739 | Eigen::Array<Scalar, 18, 1> QuadratureKronrod<Scalar>::abscissaeGauss71 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 41>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 41, 1, 0, 41, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 41, 1, 0, 41, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 41, 1, 0, 41, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:787:29: required from 'class Numer::QuadratureKronrod<double>'
787 | Eigen::Array<Scalar, 41, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 41, 1, 0, 41, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 41, 1, 0, 41, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 41, 1, 0, 41, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:787:29: required from 'class Numer::QuadratureKronrod<double>'
787 | Eigen::Array<Scalar, 41, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 20>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 20, 1, 0, 20, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 20, 1, 0, 20, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 20, 1, 0, 20, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:879:29: required from 'class Numer::QuadratureKronrod<double>'
879 | Eigen::Array<Scalar, 20, 1> QuadratureKronrod<Scalar>::abscissaeGauss81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 20, 1, 0, 20, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 20, 1, 0, 20, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 20, 1, 0, 20, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:879:29: required from 'class Numer::QuadratureKronrod<double>'
879 | Eigen::Array<Scalar, 20, 1> QuadratureKronrod<Scalar>::abscissaeGauss81 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 46>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 46, 1, 0, 46, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 46, 1, 0, 46, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 46, 1, 0, 46, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:931:29: required from 'class Numer::QuadratureKronrod<double>'
931 | Eigen::Array<Scalar, 46, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 46, 1, 0, 46, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 46, 1, 0, 46, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 46, 1, 0, 46, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:931:29: required from 'class Numer::QuadratureKronrod<double>'
931 | Eigen::Array<Scalar, 46, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 23>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 23, 1, 0, 23, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 23, 1, 0, 23, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 23, 1, 0, 23, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1033:29: required from 'class Numer::QuadratureKronrod<double>'
1033 | Eigen::Array<Scalar, 23, 1> QuadratureKronrod<Scalar>::abscissaeGauss91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 23, 1, 0, 23, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 23, 1, 0, 23, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 23, 1, 0, 23, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1033:29: required from 'class Numer::QuadratureKronrod<double>'
1033 | Eigen::Array<Scalar, 23, 1> QuadratureKronrod<Scalar>::abscissaeGauss91 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 51>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 51, 1, 0, 51, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 51, 1, 0, 51, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 51, 1, 0, 51, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1091:29: required from 'class Numer::QuadratureKronrod<double>'
1091 | Eigen::Array<Scalar, 51, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 51, 1, 0, 51, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 51, 1, 0, 51, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 51, 1, 0, 51, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1091:29: required from 'class Numer::QuadratureKronrod<double>'
1091 | Eigen::Array<Scalar, 51, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 25>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 25, 1, 0, 25, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 25, 1, 0, 25, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 25, 1, 0, 25, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1203:29: required from 'class Numer::QuadratureKronrod<double>'
1203 | Eigen::Array<Scalar, 25, 1> QuadratureKronrod<Scalar>::abscissaeGauss101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 25, 1, 0, 25, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 25, 1, 0, 25, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 25, 1, 0, 25, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1203:29: required from 'class Numer::QuadratureKronrod<double>'
1203 | Eigen::Array<Scalar, 25, 1> QuadratureKronrod<Scalar>::abscissaeGauss101 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 61>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 61, 1, 0, 61, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 61, 1, 0, 61, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 61, 1, 0, 61, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1265:29: required from 'class Numer::QuadratureKronrod<double>'
1265 | Eigen::Array<Scalar, 61, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 61, 1, 0, 61, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 61, 1, 0, 61, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 61, 1, 0, 61, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1265:29: required from 'class Numer::QuadratureKronrod<double>'
1265 | Eigen::Array<Scalar, 61, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 30>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 30, 1, 0, 30, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 30, 1, 0, 30, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 30, 1, 0, 30, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1397:29: required from 'class Numer::QuadratureKronrod<double>'
1397 | Eigen::Array<Scalar, 30, 1> QuadratureKronrod<Scalar>::abscissaeGauss121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 30, 1, 0, 30, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 30, 1, 0, 30, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 30, 1, 0, 30, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1397:29: required from 'class Numer::QuadratureKronrod<double>'
1397 | Eigen::Array<Scalar, 30, 1> QuadratureKronrod<Scalar>::abscissaeGauss121 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 101>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 101, 1, 0, 101, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 101, 1, 0, 101, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 101, 1, 0, 101, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1469:30: required from 'class Numer::QuadratureKronrod<double>'
1469 | Eigen::Array<Scalar, 101, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 101, 1, 0, 101, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 101, 1, 0, 101, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 101, 1, 0, 101, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1469:30: required from 'class Numer::QuadratureKronrod<double>'
1469 | Eigen::Array<Scalar, 101, 1> QuadratureKronrod<Scalar>::abscissaeGaussKronrod201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 50>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 50, 1, 0, 50, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 50, 1, 0, 50, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 50, 1, 0, 50, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1681:29: required from 'class Numer::QuadratureKronrod<double>'
1681 | Eigen::Array<Scalar, 50, 1> QuadratureKronrod<Scalar>::abscissaeGauss201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 50, 1, 0, 50, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 50, 1, 0, 50, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 50, 1, 0, 50, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/GaussKronrodNodesWeights.h:1681:29: required from 'class Numer::QuadratureKronrod<double>'
1681 | Eigen::Array<Scalar, 50, 1> QuadratureKronrod<Scalar>::abscissaeGauss201 =
| ^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:449:40: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:887:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:497:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::prod() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
497 | return derived().redux(Eigen::internal::scalar_product_op<Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:38: required from here
205 | scalefac((upper - lower).prod()),
| ~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:37: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:37: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/LineSearchNocedalWright.h:143:30: required from 'static void LBFGSpp::LineSearchNocedalWright<Scalar>::LineSearch(Foo&, const LBFGSpp::LBFGSParam<Scalar>&, const Vector&, const Vector&, const Scalar&, Scalar&, Scalar&, Vector&, Scalar&, Vector&) [with Foo = Numer::LBFGSFun; Scalar = double; Vector = Eigen::Matrix<double, -1, 1>]'
143 | x.noalias() = xp + step * drt;
| ~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:127:43: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
127 | LineSearch<Scalar>::LineSearch(f, m_param, m_xp, m_drt, step_max, step, fx, m_grad, dg, x);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:161:56: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
161 | if (vecs.dot(vecy) > eps * vecy.squaredNorm())
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:37: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:56: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:59: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:29: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<Eigen::Matrix<double, -1, 1> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:82: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase<Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >'
59 | template<typename Derived> class RefBase
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:329:77: required from 'class Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >'
329 | template<typename TPlainObjectType, int Options, typename StrideType> class Ref<const TPlainObjectType, Options, StrideType>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:163:41: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
163 | res.noalias() -= m_alpha[j] * m_y.col(j);
| ~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 7>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 7, 1, 0, 7, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 7, 1, 0, 7, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 7, 1, 0, 7, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 7, 1, 0, 7, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 8, 1, 0, 8, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 11, 1, 0, 11, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 16, 1, 0, 16, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 21, 1, 0, 21, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 26, 1, 0, 26, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 31, 1, 0, 31, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 71>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 71, 1, 0, 71, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 71, 1, 0, 71, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 71, 1, 0, 71, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 71, 1, 0, 71, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 71, 1, 0, 71, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 71, 1, 0, 71, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 35>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 35, 1, 0, 35, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 35, 1, 0, 35, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 35, 1, 0, 35, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 35, 1, 0, 35, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 36, 1, 0, 36, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 81>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 81, 1, 0, 81, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 81, 1, 0, 81, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 81, 1, 0, 81, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 81, 1, 0, 81, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 81, 1, 0, 81, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 81, 1, 0, 81, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 40>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 40, 1, 0, 40, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 40, 1, 0, 40, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 40, 1, 0, 40, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 40, 1, 0, 40, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 41, 1, 0, 41, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 91>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 91, 1, 0, 91, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 91, 1, 0, 91, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 91, 1, 0, 91, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 91, 1, 0, 91, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 91, 1, 0, 91, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 91, 1, 0, 91, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 45>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 45, 1, 0, 45, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 45, 1, 0, 45, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 45, 1, 0, 45, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 45, 1, 0, 45, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 46, 1, 0, 46, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 51, 1, 0, 51, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 121>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 121, 1, 0, 121, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 121, 1, 0, 121, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 121, 1, 0, 121, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 121, 1, 0, 121, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 121, 1, 0, 121, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 121, 1, 0, 121, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 60>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 60, 1, 0, 60, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 60, 1, 0, 60, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 60, 1, 0, 60, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 60, 1, 0, 60, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 61, 1, 0, 61, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 201>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 201, 1, 0, 201, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 201, 1, 0, 201, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 201, 1, 0, 201, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 201, 1, 0, 201, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 201, 1, 0, 201, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 201, 1, 0, 201, 1>'
45 | class Array
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:542:57: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
542 | Eigen::Array<Scalar, 2 * numKronrodRows - 1, 1> points;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 100>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 100, 1, 0, 100, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits<Eigen::Array<double, 100, 1, 0, 100, 1> >'
17 | struct traits<Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> > : traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
18 | struct traits<Map<PlainObjectType, MapOptions, StrideType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 100, 1, 0, 100, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 100, 1, 0, 100, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
32 | enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
111 | int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:559:67: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
559 | Eigen::Map< Eigen::Array<Scalar, numKronrodRows - 1, 1> > f1Array(&fPoints[1], size1, 1);
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:36: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Array<double, 101, 1, 0, 101, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:73: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:47: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:74:32: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::reset(int, int) [with Scalar = double; bool LBFGSB = false]'
74 | m_permMinv.diagonal().setOnes();
| ~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:43:21: required from 'void LBFGSpp::LBFGSSolver<Scalar, LineSearch>::reset(int) [with Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright]'
43 | m_bfgs.reset(n, m);
| ~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:85:9: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
85 | reset(n);
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:123:35: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
123 | Scalar dg = m_grad.dot(m_drt);
| ~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:20:67: required from 'Derived& Eigen::DenseBase<Derived>::operator*=(const Scalar&) [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:141:50: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
141 | m_permMinv.block(m_m, m_m, m_m, m_m) *= m_theta;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from 'Derived& Eigen::DenseBase<Derived>::operator/=(const Scalar&) [with Derived = Eigen::Matrix<double, -1, 1>; Scalar = double]'
41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:167:13: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
167 | res /= m_theta;
| ~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; Func = Eigen::internal::scalar_product_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:497:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::prod() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, const Eigen::Ref<const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
497 | return derived().redux(Eigen::internal::scalar_product_op<Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:205:38: required from here
205 | scalefac((upper - lower).prod()),
| ~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<1> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1018:71: required from 'struct Eigen::internal::evaluator<Eigen::Ref<Eigen::Matrix<double, -1, 1> > >'
1018 | Flags = evaluator<Map<PlainObjectType, RefOptions, StrideType> >::Flags,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Functor = assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Ref<Eigen::Matrix<double, -1, 1> >; ExpressionType = Eigen::Matrix<double, -1, 1>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:54:20: required from here
54 | xx.noalias() = x;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:87:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
87 | const Scalar ys = m_s.col(loc).dot(m_y.col(loc));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:91: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:83: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 2>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 2> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 2> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 2>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:361:50: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
361 | Eigen::Matrix<Scalar, Eigen::Dynamic, 2> X(ldim, 2);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:14: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:33: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:39: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:81: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:92: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:103: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:162:40: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_alpha[j] = m_s.col(j).dot(res) / m_ys[j];
| ~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Array<double, -1, 1>; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array<double, -1, 1>; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Array<double, -1, 1> >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nbinomGLM.cpp:64:35: required from here
64 | const double f = -1.0 * dw.sum() / cnst[i] + neg_prior / cnst[i] + 10.0;
| ~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:277:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 7, 1, 0, 7, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 8, 1, 0, 8, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 8; int numGaussRows = 4; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:448:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
448 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
449 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
450 | QuadratureKronrod<Scalar>::weightsGaussKronrod15, QuadratureKronrod<Scalar>::weightsGauss15,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
451 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 10, 1, 0, 10, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 11, 1, 0, 11, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 11; int numGaussRows = 5; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:454:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
454 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
455 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
456 | QuadratureKronrod<Scalar>::weightsGaussKronrod21, QuadratureKronrod<Scalar>::weightsGauss21,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
457 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 15, 1, 0, 15, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 16, 1, 0, 16, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 16; int numGaussRows = 8; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:460:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
460 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
461 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | QuadratureKronrod<Scalar>::weightsGaussKronrod31, QuadratureKronrod<Scalar>::weightsGauss31,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 20, 1, 0, 20, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 21, 1, 0, 21, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 21; int numGaussRows = 10; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:466:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
466 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
467 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | QuadratureKronrod<Scalar>::weightsGaussKronrod41, QuadratureKronrod<Scalar>::weightsGauss41,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 25, 1, 0, 25, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 26, 1, 0, 26, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 26; int numGaussRows = 13; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:472:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
472 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
473 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | QuadratureKronrod<Scalar>::weightsGaussKronrod51, QuadratureKronrod<Scalar>::weightsGauss51,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 30, 1, 0, 30, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 31, 1, 0, 31, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 31; int numGaussRows = 15; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:478:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
478 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
479 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480 | QuadratureKronrod<Scalar>::weightsGaussKronrod61, QuadratureKronrod<Scalar>::weightsGauss61,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
481 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 35, 1, 0, 35, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 36, 1, 0, 36, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 36; int numGaussRows = 18; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:484:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
484 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
485 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
486 | QuadratureKronrod<Scalar>::weightsGaussKronrod71, QuadratureKronrod<Scalar>::weightsGauss71,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from 'struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, Eigen::internal::IndexBased, double>'
564 | CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<UnaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:161:56: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
161 | if (vecs.dot(vecy) > eps * vecy.squaredNorm())
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; ExpressionType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:110:68: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
110 | m_permMinv.block(m_m + loc, m_m, 1, m_ncorr).noalias() = Ss.transpose();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from 'struct Eigen::internal::evaluator_wrapper_base<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
1384 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from 'struct Eigen::internal::unary_evaluator<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, double>'
1464 | struct unary_evaluator<ArrayWrapper<TArgType> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array<double, -1, 1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::ArrayWrapper<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:33:60: required from here
33 | Eigen::ArrayXd xbeta_off = xbeta + offset.col(i).array();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 40, 1, 0, 40, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 41, 1, 0, 41, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 41; int numGaussRows = 20; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:490:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
490 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
491 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
492 | QuadratureKronrod<Scalar>::weightsGaussKronrod81, QuadratureKronrod<Scalar>::weightsGauss81,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 45, 1, 0, 45, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 46, 1, 0, 46, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 46; int numGaussRows = 23; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:496:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
496 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
497 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498 | QuadratureKronrod<Scalar>::weightsGaussKronrod91, QuadratureKronrod<Scalar>::weightsGauss91,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
499 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 50, 1, 0, 50, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 51, 1, 0, 51, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 51; int numGaussRows = 25; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:502:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
502 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
503 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
504 | QuadratureKronrod<Scalar>::weightsGaussKronrod101, QuadratureKronrod<Scalar>::weightsGauss101,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 60, 1, 0, 60, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 61, 1, 0, 61, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 61; int numGaussRows = 30; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:508:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
508 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
509 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510 | QuadratureKronrod<Scalar>::weightsGaussKronrod121, QuadratureKronrod<Scalar>::weightsGauss121,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
511 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Array<double, 100, 1, 0, 100, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Block<Eigen::Array<double, 101, 1, 0, 101, 1>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:579:85: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrodHelper(Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numKronrodRows, 1, alignment, numKronrodRows, 1>, Eigen::Array<Scalar_, numGaussRows, 1, alignment, numGaussRows, 1>, const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; int numKronrodRows = 101; int numGaussRows = 50; int alignment = 0; Scalar_ = double; Scalar = double]'
579 | resultKronrod += ((f1Array + f2Array) * weightsGaussKronrod.head(size1)).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:514:41: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureKronrod(const FunctionType&, Scalar, Scalar, Scalar&, Scalar&, Scalar&, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
514 | return quadratureKronrodHelper(
| ~~~~~~~~~~~~~~~~~~~~~~~^
515 | QuadratureKronrod<Scalar>::abscissaeGaussKronrod201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
516 | QuadratureKronrod<Scalar>::weightsGaussKronrod201, QuadratureKronrod<Scalar>::weightsGauss201,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
517 | f, lowerLimit, upperLimit, estimatedError, absIntegral, absDiffIntegral, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/Integrator.h:116:44: required from 'Numer::Integrator<Scalar_>::Scalar Numer::Integrator<Scalar_>::quadratureAdaptive(const FunctionType&, Scalar, Scalar, Scalar, Scalar, QuadratureRule) [with FunctionType = Numer::Func; Scalar_ = double; Scalar = double]'
116 | Scalar integral = quadratureKronrod(
| ~~~~~~~~~~~~~~~~~^
117 | f, lowerLimit, upperLimit, m_estimatedError, absDiff, absResult, quadratureRule);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/integration/wrapper.h:83:46: required from here
83 | double res = intgr.quadratureAdaptive(f, lower, upper, eps_abs, eps_rel, rule);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:123:35: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
123 | Scalar dg = m_grad.dot(m_drt);
| ~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:90:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
90 | m_theta = m_y.col(loc).squaredNorm() / ys;
| ~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from 'struct Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>'
369 | typedef typename nested_eval<Lhs,1>::type LhsNested;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:87:43: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
87 | const Scalar ys = m_s.col(loc).dot(m_y.col(loc));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:333:64: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_1x1(Index) [with Scalar = double; Index = long long int]'
333 | MapVec(col_pointer(j + k + 1), ldim - j).noalias() -= (lptr[j] / akk) * l.tail(ldim - j);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:416:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
416 | m_info = gaussian_elimination_1x1(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; ExpressionType = Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:362:28: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
362 | X.col(0).noalias() = l1 * e11 + l2 * e21;
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, 2>, -1, 1, true>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:368:64: required from 'int LBFGSpp::BKLDLT<Scalar>::gaussian_elimination_2x2(Index) [with Scalar = double; Index = long long int]'
368 | MapVec(col_pointer(j + k + 2), ldim - j).noalias() -= (X.col(0).tail(ldim - j) * l1ptr[j] + X.col(1).tail(ldim - j) * l2ptr[j]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BKLDLT.h:420:26: required from 'void LBFGSpp::BKLDLT<Scalar>::compute(ConstGenericMatrix&, int, const Scalar&) [with Scalar = double; ConstGenericMatrix = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >]'
420 | m_info = gaussian_elimination_2x2(k);
| ^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:142:34: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
142 | m_permMsolver.compute(m_permMinv);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]'
37 | return a.template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:162:40: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::apply_Hv(const Vector&, const Scalar&, Vector&) [with Scalar = double; bool LBFGSB = false; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_alpha[j] = m_s.col(j).dot(res) / m_ys[j];
| ~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:165:28: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
165 | m_bfgs.apply_Hv(m_grad, -Scalar(1), m_drt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Array<double, -1, 1>; Scalar = double]'
347 | return derived() = Constant(rows(), cols(), val);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:333:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:87:38: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
87 | typedef typename Traits::LhsPacket LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:91:42: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
91 | typedef typename HalfTraits::LhsPacket LhsPacketHalf;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 2>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:95:45: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
95 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::internal::generic_product_impl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper<Eigen::Array<double, -1, 1> >'
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; Dest = Eigen::Array<double, -1, 1>; typename Dest::Scalar = double]'
296 | dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size());
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>; U = Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block<const Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Ref<const Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:32:32: required from here
32 | Eigen::ArrayXd xbeta = x * beta;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; Derived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Array<double, -1, 1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array<double, -1, 1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Array<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:288:29: required from 'Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase<OtherDerived>&, typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if<std::is_convertible<typename OtherDerived::Scalar, typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar>::value, PrivateType>::type = Eigen::Array<double, -1, 1>::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits<Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >::Scalar = double]'
288 | : Base(other.derived())
| ^
nbinomGLM.cpp:67:55: required from here
67 | Eigen::ArrayXd d_neg_lik = -1.0 * x.transpose() * cw;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGSpp/BFGSMat.h:109:20: required from 'void LBFGSpp::BFGSMat<Scalar, LBFGSB>::add_correction(const RefConstVec&, const RefConstVec&) [with Scalar = double; bool LBFGSB = false; RefConstVec = Eigen::Ref<const Eigen::Matrix<double, -1, 1> >]'
109 | Vector Ss = m_s.leftCols(m_ncorr).transpose() * m_s.col(loc);
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/LBFGS.h:162:38: required from 'int LBFGSpp::LBFGSSolver<Scalar, LineSearch>::minimize(Foo&, Vector&, Scalar&) [with Foo = Numer::LBFGSFun; Scalar = double; LineSearch = LBFGSpp::LineSearchNocedalWright; Vector = Eigen::Matrix<double, -1, 1>]'
162 | m_bfgs.add_correction(vecs, vecy);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppNumerical/include/optimization/wrapper.h:57:24: required from here
57 | solver.minimize(fun, xx, fx_opt);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o apeglm.dll tmp.def RcppExports.o betabinGLM.o nbinomGLM.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-apeglm/00new/apeglm/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apeglm)