Multiple platform build/check report for BioC 3.21 - BUILD results for SingleCellAlleleExperiment on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4756
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4475
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4435
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4390
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4383
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SingleCellAlleleExperiment on lconway

To the developers/maintainers of the SingleCellAlleleExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellAlleleExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SingleCellAlleleExperiment

Version: 1.3.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellAlleleExperiment

StartedAt: 2025-01-03 18:20:15 -0500 (Fri, 03 Jan 2025)

EndedAt: 2025-01-03 18:22:17 -0500 (Fri, 03 Jan 2025)

EllapsedTime: 121.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellAlleleExperiment
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* checking for file ‘SingleCellAlleleExperiment/DESCRIPTION’ ... OK
* preparing ‘SingleCellAlleleExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘scae_intro.Rmd’ using rmarkdown

Quitting from lines 249-270 [unnamed-chunk-10] (scae_intro.Rmd)
Error: processing vignette 'scae_intro.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `compute_aesthetics()`:
! Aesthetics are not valid data columns.
✖ The following aesthetics are invalid:
✖ `y = fitted`
ℹ Did you mistype the name of a data column or forget to add `after_stat()`?
--- failed re-building ‘scae_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘scae_intro.Rmd’

Error: Vignette re-building failed.
Execution halted