Mustafa Erhan Ozer
| Snapshot Date: 2025-01-03 13:40 -0500 (Fri, 03 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-04 11:46 -0500 (Sat, 04 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4756 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4475 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4435 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4383 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2082/2275 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-03 21:46:57 -0500 (Fri, 03 Jan 2025) |
| EndedAt: 2025-01-03 21:48:50 -0500 (Fri, 03 Jan 2025) |
| EllapsedTime: 112.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 91949,2790,796,4779,1595,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4318,55902,54675,2767,2572,2762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5625,151,65080,6198,6786,169792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 358,116085,2194,3952,8642,6775
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,10226,6548,1491,2712,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111240474,4288,51004,3032,387787,89866
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2593,200186,83693,6927,60528,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,3586,2170,93587,6347,8202
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,116150,51204,51608,2542,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 170302,4852,1869,3074,5239,5498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2200,5239,1589,2159,91452,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7035,401,50943,84317,2305,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,6821,1571,2548,7431,6714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,25813,125170,8854,10423,2152
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,81704,5962,2099,5787,27232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,199,11255,3240,3479,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,55005,6571,8854,3813,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,25813,825,685,53346,3159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10753,6772,104909134,4852,5723,6389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5286,1738,493,6648,266,8803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,627,54901,26060,5313,29078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,2876,84342,64788,119559,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,6183,19,2628,6999,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132001,3630,3122,5306,4744,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4723,6564,60528,1544,4988,1582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,7355,26517,10599,51083,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,79949,111240474,23291,10857,51082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,3155,2729,7372,1555,407007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,326625,51316,7057,3123,361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9377,7292,51103,6772,2760,65993
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,3119,8877,51079,2820,4338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,5629,158,9095,3552,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7480,84239,10524,11222,7052,383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,9559,6888,3700,22901,2584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,79001,2590,10580,958,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1392,2790,7480,463,91452,8462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,10891,330,84693,203068,153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1080,23062,2641,80267,2203,840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,1641,100303755,5584,9429,8862
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80222,56623,197,6392,116085,1802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,2581,427,6374,10560,25915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,186,4879,160287,6565,5191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,3375,57817,153,2584,3978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,55788,5105,81689,1641,1968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,819,517,6775,27125,31
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23400,3783,5194,1843,664,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,7078,7407,37,551,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,64116,265,5654,8743,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,3117,9559,51206,9095,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,9054,4688,29947,2710,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,4285,4704,91574,241,3562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,64131,4233,22820,1607,5195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54982,3351,25915,1339,10724,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,5617,55163,2247,64788,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,5329,3383,2006,5230,10560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,118,8471,80347,1601,5345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5631,6999,6647,4715,51083,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,2677,825,2990,84061,6833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83693,10165,776,80224,2170,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 479,11222,387082,462,7248,2539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,25813,55768,91869,6906,6319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,84987,2646,64900,5306,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,10243,131118,10616,3992,617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,51458,29929,7351,3507,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,6948,5167,6927,2628,65080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2538,3416,563,85569,5660,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 31,9382,2244,1401,2119,3929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,2695,64432,3081,5054,2118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,491,10842,3596,10577,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,5972,64788,1392,80331,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 140803,5962,1584,3123,5588,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,2875,4853,4312,5230,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3356,23410,3558,3479,6649,9374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,10020,3460,57048,3559,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2063,178,1022,7376,9388,91949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,2791,56052,795,4925,92609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 361,3417,23291,5122,7100,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54809,1149,30061,4598,2767,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,4654,1282,4828,116931,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,84947,3651,2717,8772,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4851,51176,10019,6354,51144,1468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10724,7038,2159,29929,22901,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,3783,291,1968,116931,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,57505,54567,617,6891,54552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7412,308,2739,79158,79783,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6183,9997,6182,1337,1802,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 210,2984,212,3141,53905,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3692,1353,3552,55644,150379,60528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,2936,53632,4724,10537,5506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,2328,1909,3700,56052,407006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,5919,9498,6571,11019,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,255308,91452,2896,5770,79087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3638,152078,2745,599,2475,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,694,54567,8560,11096,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57570,9607,57176,175,5445,407024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51,6352,284184,2200,388753,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,3483,84061,189,111240474,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4153,2280,1443,4299,7276,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1718,10379,10682,3158,80207,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 292,5243,53346,2720,2113,1890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1606,51206,104909134,29926,64432,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2309,4069,406906,4684,1992,2395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23543,6716,10316,3375,538,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,2571,54552,434,81034,7345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5321,5805,3638,256471,340024,57678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,201305,656,5571,199,51660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,6387,29960,6571,51128,2632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 654,351,376497,7172,291,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,4598,2559,952,64788,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2152,7498,84340,629,2159,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50943,9971,6576,6582,54802,4758
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84693,6513,22845,2628,25839,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3490,54148,5330,7098,3953,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2584,8862,200186,57818,6522,50507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3074,253943,6714,1348,54802,407010
--> return NULL...
2025-01-03 21:48:46.865 R[62731:254633915] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
23.279 0.409 23.776
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.266 | 0.012 | 0.439 | |