Gavin Rhys Lloyd
| Snapshot Date: 2024-11-26 13:40 -0500 (Tue, 26 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/MetMashR |
| git_branch: devel |
| git_last_commit: e797206 |
| git_last_commit_date: 2024-10-29 11:34:47 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-27 11:44 -0500 (Wed, 27 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4396 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4110 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1231/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MetMashR 1.1.0 (landing page) Gavin Rhys Lloyd
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the MetMashR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetMashR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MetMashR |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR |
| StartedAt: 2024-11-26 16:50:27 -0500 (Tue, 26 Nov 2024) |
| EndedAt: 2024-11-26 16:52:15 -0500 (Tue, 26 Nov 2024) |
| EllapsedTime: 108.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR ### ############################################################################## ############################################################################## * checking for file ‘MetMashR/DESCRIPTION’ ... OK * preparing ‘MetMashR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown Quitting from lines 535-553 [unnamed-chunk-19] (Extending_MetMashR.Rmd) Error: processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘Extending_MetMashR.Rmd’ --- re-building ‘annotate_mixtures.Rmd’ using rmarkdown 2024-11-26 16:51:35.947 R[59689:23773474] XType: Using static font registry. --- finished re-building ‘annotate_mixtures.Rmd’ --- re-building ‘exploring_mtox.Rmd’ using rmarkdown Quitting from lines 149-170 [unnamed-chunk-7] (exploring_mtox.Rmd) Error: processing vignette 'exploring_mtox.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘exploring_mtox.Rmd’ --- re-building ‘using_MetMashR.Rmd’ using rmarkdown --- finished re-building ‘using_MetMashR.Rmd’ SUMMARY: processing the following files failed: ‘Extending_MetMashR.Rmd’ ‘exploring_mtox.Rmd’ Error: Vignette re-building failed. Execution halted