Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-28 11:51 -0400 (Fri, 28 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4783 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 962/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.25.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.25.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HiCBricks_1.25.0.tar.gz |
StartedAt: 2025-03-27 22:58:57 -0400 (Thu, 27 Mar 2025) |
EndedAt: 2025-03-27 23:02:30 -0400 (Thu, 27 Mar 2025) |
EllapsedTime: 213.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HiCBricks_1.25.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/HiCBricks.Rcheck’ * using R Under development (unstable) (2025-03-13 r87965) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.25.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘HiCBricks’ ... ** this is package ‘HiCBricks’ version ‘1.25.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.416 | 0.032 | 1.447 | |
BrickContainer_change_output_directory | 1.300 | 0.017 | 1.318 | |
BrickContainer_get_path_to_file | 0.934 | 0.014 | 0.948 | |
BrickContainer_list_chromosomes | 0.914 | 0.009 | 0.925 | |
BrickContainer_list_experiment_name | 0.879 | 0.013 | 0.892 | |
BrickContainer_list_files | 0.898 | 0.017 | 0.916 | |
BrickContainer_list_output_directory | 0.860 | 0.009 | 0.870 | |
BrickContainer_list_resolutions | 0.944 | 0.078 | 1.023 | |
BrickContainer_unlink_resolution | 1.927 | 0.098 | 2.096 | |
Brick_add_ranges | 2.402 | 0.065 | 2.467 | |
Brick_call_compartments | 1.668 | 0.084 | 1.756 | |
Brick_export_to_sparse | 2.900 | 0.102 | 3.004 | |
Brick_fetch_range_index | 1.178 | 0.025 | 1.266 | |
Brick_fetch_row_vector | 1.925 | 0.030 | 1.955 | |
Brick_get_bintable | 1.066 | 0.053 | 1.119 | |
Brick_get_chrominfo | 0.959 | 0.018 | 0.977 | |
Brick_get_entire_matrix | 1.477 | 0.029 | 1.561 | |
Brick_get_matrix | 2.108 | 0.150 | 2.258 | |
Brick_get_matrix_mcols | 1.376 | 0.108 | 1.485 | |
Brick_get_matrix_within_coords | 1.986 | 0.102 | 2.088 | |
Brick_get_ranges | 1.034 | 0.025 | 1.060 | |
Brick_get_values_by_distance | 1.460 | 0.059 | 1.519 | |
Brick_get_vector_values | 1.130 | 0.071 | 1.201 | |
Brick_list_matrices | 0.764 | 0.021 | 0.785 | |
Brick_list_matrix_mcols | 0.744 | 0.014 | 0.757 | |
Brick_list_mcool_normalisations | 0.000 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.776 | 0.015 | 0.791 | |
Brick_list_ranges_mcols | 0.778 | 0.014 | 0.792 | |
Brick_load_cis_matrix_till_distance | 1.011 | 0.016 | 1.027 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0.001 | 0.000 | 0.000 | |
Brick_load_matrix | 1.008 | 0.019 | 1.027 | |
Brick_local_score_differentiator | 1.831 | 0.210 | 2.132 | |
Brick_make_ranges | 0.009 | 0.000 | 0.009 | |
Brick_matrix_dimensions | 1.032 | 0.222 | 1.254 | |
Brick_matrix_exists | 0.946 | 0.021 | 0.967 | |
Brick_matrix_filename | 0.985 | 0.058 | 1.045 | |
Brick_matrix_isdone | 1.047 | 0.021 | 1.069 | |
Brick_matrix_issparse | 0.954 | 0.047 | 1.002 | |
Brick_matrix_maxdist | 0.955 | 0.022 | 0.978 | |
Brick_matrix_minmax | 0.948 | 0.019 | 0.968 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 0.711 | 0.007 | 0.719 | |
Brick_return_region_position | 0.797 | 0.008 | 0.807 | |
Brick_vizart_plot_heatmap | 1.820 | 0.073 | 1.894 | |
Create_many_Bricks | 0.698 | 0.013 | 0.711 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 0.739 | 0.010 | 0.749 | |