Multiple platform build/check report for BioC 3.21 - BUILD BIN results for CelliD on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4756
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4475
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4435
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4390
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4383
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for CelliD on palomino7

To the developers/maintainers of the CelliD package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CelliD.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CelliD

Version: 1.15.0

Command: rm -rf CelliD.buildbin-libdir && mkdir CelliD.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=CelliD.buildbin-libdir CelliD_1.15.0.tar.gz

StartedAt: 2025-01-04 07:04:22 -0500 (Sat, 04 Jan 2025)

EndedAt: 2025-01-04 07:05:53 -0500 (Sat, 04 Jan 2025)

EllapsedTime: 90.9 seconds

RetCode: 0

Status: OK

PackageFile: CelliD_1.15.0.zip

PackageFileSize: 1.57 MiB

Command output

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### Running command:
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###   rm -rf CelliD.buildbin-libdir && mkdir CelliD.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=CelliD.buildbin-libdir CelliD_1.15.0.tar.gz
###
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* installing *source* package 'CelliD' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
using C++11
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c dist.cpp -o dist.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c mca.cpp -o mca.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c order.cpp -o order.o
order.cpp: In function 'Rcpp::NumericMatrix fastOrder(Rcpp::NumericMatrix, Rcpp::NumericMatrix)':
order.cpp:21:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   21 |     for(int a = 0; a < C.n_cols; a = a + 1 ) {
      |                    ~~^~~~~~~~~~
g++ -shared -s -static-libgcc -o CelliD.dll tmp.def RcppExports.o dist.o mca.o order.o -fopenmp -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRlapack -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/CelliD.buildbin-libdir/00LOCK-CelliD/00new/CelliD/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'data.table::shift' by 'tictoc::shift' when loading 'CelliD'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'data.table::shift' by 'tictoc::shift' when loading 'CelliD'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'data.table::shift' by 'tictoc::shift' when loading 'CelliD'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CelliD' as CelliD_1.15.0.zip
* DONE (CelliD)