Multiple platform build/check report for BioC 3.21 - BUILD results for CellNOptR on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4779
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4550
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4578
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4530
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for CellNOptR on nebbiolo1

To the developers/maintainers of the CellNOptR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CellNOptR

Version: 1.53.1

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CellNOptR

StartedAt: 2025-03-23 16:32:14 -0400 (Sun, 23 Mar 2025)

EndedAt: 2025-03-23 16:32:17 -0400 (Sun, 23 Mar 2025)

EllapsedTime: 3.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CellNOptR
###
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* checking for file ‘CellNOptR/DESCRIPTION’ ... OK
* preparing ‘CellNOptR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘CellNOptR’ ...
** this is package ‘CellNOptR’ version ‘1.53.1’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -Wall -Werror=format-security -c simulatorT1.c -o simulatorT1.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -Wall -Werror=format-security -c simulatorTN.c -o simulatorTN.o
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o CellNOptR.so simulatorT1.o simulatorTN.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /tmp/Rtmp0iuaR2/Rinst155fd24c8ccf50/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package ‘Rgraphviz’ 2.51.5 was found, but <= 2.50.0 is required by ‘CellNOptR’
Execution halted
ERROR: lazy loading failed for package ‘CellNOptR’
* removing ‘/tmp/Rtmp0iuaR2/Rinst155fd24c8ccf50/CellNOptR’
      -----------------------------------
ERROR: package installation failed