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CHECK report for Director on tokay2

This page was generated on 2019-03-11 11:29:13 -0400 (Mon, 11 Mar 2019).

Package 426/1676HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Director 1.9.0
Katherine Icay
Snapshot Date: 2019-03-10 17:02:02 -0400 (Sun, 10 Mar 2019)
URL: https://git.bioconductor.org/packages/Director
Branch: master
Last Commit: 9785565
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: Director
Version: 1.9.0
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Director.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Director_1.9.0.tar.gz
StartedAt: 2019-03-11 02:38:11 -0400 (Mon, 11 Mar 2019)
EndedAt: 2019-03-11 02:38:46 -0400 (Mon, 11 Mar 2019)
EllapsedTime: 35.6 seconds
RetCode: 0
Status:  OK  
CheckDir: Director.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Director.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Director_1.9.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/Director.Rcheck'
* using R Under development (unstable) (2019-01-10 r75962)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Director/DESCRIPTION' ... OK
* this is package 'Director' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Director' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Director.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Director_1.9.0.tar.gz && rm -rf Director.buildbin-libdir && mkdir Director.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Director.buildbin-libdir Director_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Director_1.9.0.zip && rm Director_1.9.0.tar.gz Director_1.9.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  396k  100  396k    0     0  4445k      0 --:--:-- --:--:-- --:--:-- 4779k

install for i386

* installing *source* package 'Director' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Director'
    finding HTML links ... done
    append2List                             html  
    createList                              html  
    drawSankey                              html  
    filterNumeric                           html  
    filterRelation                          html  
    filterSubset                            html  
    initSankey                              html  
    makeSankey                              html  
    mesenchymal                             html  
    poorprog                                html  
    writeSankey                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Director' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Director' as Director_1.9.0.zip
* DONE (Director)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Director' successfully unpacked and MD5 sums checked

Tests output


Example timings

Director.Rcheck/examples_i386/Director-Ex.timings

nameusersystemelapsed
append2List0.030.000.03
createList0.020.000.02
drawSankey0.210.010.52
filterNumeric0.020.000.01
filterRelation0.010.000.02
filterSubset000
initSankey0.000.020.01
makeSankey0.020.000.02
writeSankey0.090.020.95

Director.Rcheck/examples_x64/Director-Ex.timings

nameusersystemelapsed
append2List0.020.000.01
createList0.020.000.02
drawSankey0.200.060.27
filterNumeric0.020.000.02
filterRelation0.010.000.02
filterSubset000
initSankey000
makeSankey0.010.000.02
writeSankey0.110.000.39