Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:34:24 -0400 (Tue, 09 Apr 2019).
Package 1508/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
slalom 1.5.1 Davis McCarthy
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: slalom |
Version: 1.5.1 |
Command: rm -rf slalom.buildbin-libdir && mkdir slalom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slalom.buildbin-libdir slalom_1.5.1.tar.gz |
StartedAt: 2019-04-09 08:59:38 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 09:01:00 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 82.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: slalom_1.5.1.zip |
PackageFileSize: 20.27 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf slalom.buildbin-libdir && mkdir slalom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slalom.buildbin-libdir slalom_1.5.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'slalom' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c slalom-classes.cpp -o slalom-classes.o slalom-classes.cpp: In member function 'void SlalomModel::train()': slalom-classes.cpp:223:20: warning: unused variable 'meanerr' [-Wunused-variable] double meanerr = arma::mean(error); ^ slalom-classes.cpp:202:12: warning: unused variable 'meanerr' [-Wunused-variable] double meanerr = arma::mean(error); ^ slalom-classes.cpp: In member function 'void SlalomModel::updateEpsilon()': slalom-classes.cpp:431:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < this->epsilon_E1.n_elem; i++) { ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o slalom.dll tmp.def RcppExports.o slalom-classes.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/slalom.buildbin-libdir/00LOCK-slalom/00new/slalom/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'slalom' finding HTML links ... done Rcpp_SlalomModel html SlalomModel html addResultsToSingleCellExperiment html initSlalom html mesc html newSlalomModel html plotLoadings html plotRelevance html plotTerms html slalom html topTerms html trainSlalom html updateSlalom html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'slalom' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c slalom-classes.cpp -o slalom-classes.o slalom-classes.cpp: In member function 'void SlalomModel::train()': slalom-classes.cpp:223:20: warning: unused variable 'meanerr' [-Wunused-variable] double meanerr = arma::mean(error); ^ slalom-classes.cpp:202:12: warning: unused variable 'meanerr' [-Wunused-variable] double meanerr = arma::mean(error); ^ slalom-classes.cpp: In member function 'void SlalomModel::updateEpsilon()': slalom-classes.cpp:431:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < this->epsilon_E1.n_elem; i++) { ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o slalom.dll tmp.def RcppExports.o slalom-classes.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/slalom.buildbin-libdir/slalom/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'slalom' as slalom_1.5.1.zip * DONE (slalom)