Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:35:28 -0400 (Tue, 09 Apr 2019).
Package 1489/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
signet 1.3.1 Alexandre Gouy
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: signet |
Version: 1.3.1 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:signet.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings signet_1.3.1.tar.gz |
StartedAt: 2019-04-09 05:58:30 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 06:01:54 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 203.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: signet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:signet.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings signet_1.3.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/signet.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'signet/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'signet' version '1.3.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'signet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE ':::' calls which should be '::': 'igraph:::as_graphnel' 'igraph:::graph_from_graphnel' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed testSubnet 23.19 0.02 23.20 writeXGMML 16.78 0.03 16.82 nullDist 12.46 0.68 13.12 searchSubnet 12.71 0.00 12.72 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed testSubnet 29.72 0.03 29.75 searchSubnet 19.25 0.02 19.27 writeXGMML 18.15 0.02 18.17 nullDist 16.23 0.55 16.78 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/signet.Rcheck/00check.log' for details.
signet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/signet_1.3.1.tar.gz && rm -rf signet.buildbin-libdir && mkdir signet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=signet.buildbin-libdir signet_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL signet_1.3.1.zip && rm signet_1.3.1.tar.gz signet_1.3.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 203k 100 203k 0 0 3218k 0 --:--:-- --:--:-- --:--:-- 3632k install for i386 * installing *source* package 'signet' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'signet' finding HTML links ... done Signet-class html SignetList-class html kegg_human html nullDist html scores html searchSubnet html signet html testSubnet html writeXGMML html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'signet' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'signet' as signet_1.3.1.zip * DONE (signet) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'signet' successfully unpacked and MD5 sums checked
signet.Rcheck/examples_i386/signet-Ex.timings
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signet.Rcheck/examples_x64/signet-Ex.timings
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