Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:00:09 -0400 (Tue, 09 Apr 2019).
Package 1344/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rhdf5 2.27.15 Mike Smith
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: rhdf5 |
Version: 2.27.15 |
Command: rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.27.15.tar.gz |
StartedAt: 2019-04-09 08:49:57 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 08:50:56 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 59.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: rhdf5_2.27.15.zip |
PackageFileSize: 3.816 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.27.15.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'rhdf5' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5.c -o H5.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5A.c -o H5A.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5D.c -o H5D.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5E.c -o H5E.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5F.c -o H5F.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5G.c -o H5G.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5I.c -o H5I.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5L.c -o H5L.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5O.c -o H5O.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5P.c -o H5P.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5S.c -o H5S.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5T.c -o H5T.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c H5constants.c -o H5constants.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c HandleList.cpp -o HandleList.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c HandleListWrap.c -o HandleListWrap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c h5dump.c -o h5dump.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c h5ls.c -o h5ls.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c h5testLock.c -o h5testLock.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c h5writeDataFrame.c -o h5writeDataFrame.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c printdatatype.c -o printdatatype.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O3 -Wall -std=gnu99 -mtune=generic -c wrap.c -o wrap.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5constants.o HandleList.o HandleListWrap.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o wrap.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/library/Rhdf5lib/lib/i386 -lhdf5_cpp -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rhdf5' finding HTML links ... done H5 html H5A html H5D html H5F html H5G html H5I html H5IdComponent-class html H5L html H5O html H5P html H5P_DATASET_ACCESS html H5P_DATASET_CREATE html H5P_LINK_CREATE html H5S html H5T html h5closeAll html h5const html h5createAttribute html h5createDataset html h5createFile html h5createGroup html h5delete html h5errorHandling html h5fileLocking html h5listIdentifier html h5ls html h5save html h5set_extent html h5version html h5write html methods-And html methods-Dollar1 html methods-Dollar2 html methods-subset1 html methods-subset2 html rhdf5 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rhdf5' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5.c -o H5.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5A.c -o H5A.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5D.c -o H5D.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5E.c -o H5E.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5F.c -o H5F.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5G.c -o H5G.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5I.c -o H5I.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5L.c -o H5L.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5O.c -o H5O.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5P.c -o H5P.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5S.c -o H5S.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5T.c -o H5T.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c H5constants.c -o H5constants.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c HandleList.cpp -o HandleList.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c HandleListWrap.c -o HandleListWrap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c h5dump.c -o h5dump.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c h5ls.c -o h5ls.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c h5testLock.c -o h5testLock.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c h5writeDataFrame.c -o h5writeDataFrame.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c printdatatype.c -o printdatatype.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mtune=generic -c wrap.c -o wrap.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5constants.o HandleList.o HandleListWrap.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o wrap.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/library/Rhdf5lib/lib/x64 -lhdf5_cpp -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5.buildbin-libdir/rhdf5/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'rhdf5' as rhdf5_2.27.15.zip * DONE (rhdf5)