Package: proFIA

Version: 1.9.1

Command: rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.9.1.tar.gz

StartedAt: 2019-04-09 08:43:10 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 08:44:33 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 82.9 seconds

RetCode: 0

Status:  OK

PackageFile: proFIA_1.9.1.zip

PackageFileSize: 1.339 MiB

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### Running command:
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###   rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.9.1.tar.gz
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install for i386

* installing *source* package 'proFIA' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/proFIA.buildbin-libdir/00LOCK-proFIA/00new/proFIA/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'proFIA'
    finding HTML links ... done
    acquisitionDirectory                    html  
    analyzeAcquisitionFIA                   html  
    determiningInjectionZone                html  
    determiningSizePeak.Geom                html  
    estimateNoiseMS                         html  
    exportDataMatrix-proFIAset-method       html  
    exportExpressionSet-proFIAset-method    html  
    exportPeakTable-proFIAset-method        html  
    exportSampleMetadata-proFIAset-method   html  
    exportVariableMetadata-proFIAset-method
                                            html  
    findBandsFIA                            html  
    findFIASignal                           html  
    findMzGroup-proFIAset-method            html  
    getInjectionPeak                        html  
    group.FIA-proFIAset-method              html  
    impute.FIA-proFIAset-method             html  
    impute.KNN_TN-proFIAset-method          html  
    impute.randomForest-proFIAset-method    html  
    makeDataMatrix-proFIAset-method         html  
    noiseEstimation-class                   html  
    peaksGroup-proFIAset-method             html  
    plot                                    html  
    plotFlowgrams-proFIAset-method          html  
    plotNoise                               html  
    plotRaw-proFIAset-method                html  
    plotSamplePeaks-proFIAset-method        html  
    proFIA-package                          html  
    proFIAset-class                         html  
    proFIAset                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'proFIA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'proFIA' as proFIA_1.9.1.zip
* DONE (proFIA)