Package: oppar

Version: 1.11.0

Command: rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oppar_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oppar.buildbin-libdir

StartedAt: 2019-04-09 06:03:19 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 06:04:31 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 72.6 seconds

RetCode: 0

Status:  OK

PackageFile: oppar_1.11.0.tgz

PackageFileSize: 5.209 MiB

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### Running command:
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###   rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oppar_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oppar.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=oppar.buildbin-libdir oppar_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package ‘oppar’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_oppar.c -o R_init_oppar.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c kernel_estimation.c -o kernel_estimation.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ks_test.c -o ks_test.o
ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable]
        double mx_value = 0.0;
               ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o oppar.so R_init_oppar.o kernel_estimation.o ks_test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/oppar.buildbin-libdir/oppar/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (oppar)


>>>>>>> 
>>>>>>> FIXING LINKS FOR oppar.buildbin-libdir/oppar/libs//oppar.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "oppar.buildbin-libdir/oppar/libs//oppar.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "oppar.buildbin-libdir/oppar/libs//oppar.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "oppar.buildbin-libdir/oppar/libs//oppar.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "oppar.buildbin-libdir/oppar/libs//oppar.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "oppar.buildbin-libdir/oppar/libs//oppar.so"