Jianqiang Sun
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TCC |
| Branch: master |
| Last Commit: e3a874b |
| Last Changed Date: 2019-02-08 19:53:40 -0400 (Fri, 08 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:09:59 -0400 (Tue, 09 Apr 2019).
| Package 1595/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCC 1.23.2 Jianqiang Sun
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: TCC |
| Version: 1.23.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TCC_1.23.2.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.23.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TCC_1.23.2.zip && rm TCC_1.23.2.tar.gz TCC_1.23.2.zip |
| StartedAt: 2019-04-08 20:20:20 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:21:28 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 67.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TCC_1.23.2.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.23.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TCC_1.23.2.zip && rm TCC_1.23.2.tar.gz TCC_1.23.2.zip
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install for i386
* installing *source* package 'TCC' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
converting help for package 'TCC'
finding HTML links ... done
ROKU html
TCC-class html
TCC html
WAD html
arab html
calcAUCValue html
calcNormFactors html
clusterSample html
estimateDE html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/estimateDE.Rd:66: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/estimateDE.Rd:73: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/estimateDE.Rd:81: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/estimateDE.Rd:128: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/estimateDE.Rd:152: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
filterLowCountGenes html
getNormalizedData html
getResult html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQdRQuS/R.INSTALL24408c81c50/TCC/man/getResult.Rd:20: file link 'plot' in package 'TCC' does not exist and so has been treated as a topic
hypoData html
hypoData_mg html
hypoData_ts html
makeFCMatrix html
nakai html
plot.TCC html
plotFCPseudocolor html
simulateReadCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCC' as TCC_1.23.2.zip
* DONE (TCC)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TCC' successfully unpacked and MD5 sums checked