Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:27:49 -0400 (Tue, 09 Apr 2019).
Package 1018/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MoonlightR 1.9.0 Antonio Colaprico
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: MoonlightR |
Version: 1.9.0 |
Command: chmod a+r MoonlightR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoonlightR |
StartedAt: 2019-04-08 23:40:18 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 23:42:14 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 117.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r MoonlightR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoonlightR ### ############################################################################## ############################################################################## * checking for file 'MoonlightR/DESCRIPTION' ... OK * preparing 'MoonlightR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Moonlight.Rmd' using rmarkdown Loading MoonlightR Loading required package: doParallel Loading required package: foreach Loading required package: iterators Loading required package: parallel Registered S3 methods overwritten by 'ggplot2': method from [.quosures rlang c.quosures rlang print.quosures rlang Registered S3 method overwritten by 'enrichplot': method from fortify.enrichResult DOSE Registered S3 method overwritten by 'R.oo': method from throw.default R.methodsS3 Registered S3 method overwritten by 'rvest': method from read_xml.response xml2 Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Invalid Parameter - /figure-html Warning in shell(paste(c(cmd, args), collapse = " ")) : 'convert "Moonlight_files/figure-html/unnamed-chunk-2-1.png" -trim "Moonlight_files/figure-html/unnamed-chunk-2-1.png"' execution failed with error code 4 Invalid Parameter - /figure-html Warning in shell(paste(c(cmd, args), collapse = " ")) : 'convert "Moonlight_files/figure-html/unnamed-chunk-12-1.png" -trim "Moonlight_files/figure-html/unnamed-chunk-12-1.png"' execution failed with error code 4 Quitting from lines 556-567 (Moonlight.Rmd) Error: processing vignette 'Moonlight.Rmd' failed with diagnostics: cannot open the connection --- failed re-building 'Moonlight.Rmd' SUMMARY: processing the following file failed: 'Moonlight.Rmd' Error: Vignette re-building failed. Execution halted