Package: IMPCdata

Version: 1.19.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMPCdata.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings IMPCdata_1.19.0.tar.gz

StartedAt: 2019-04-09 03:37:50 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 03:39:58 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 128.3 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMPCdata.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings IMPCdata_1.19.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/IMPCdata.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IMPCdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IMPCdata' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IMPCdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
getIMPCDataset 16.11   6.95   24.31
getPhenCenters  0.00   0.02    6.29
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
getIMPCDataset  8.8    4.8   15.13
getPhenCenters  0.0    0.0    6.72
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/IMPCdata_1.19.0.tar.gz && rm -rf IMPCdata.buildbin-libdir && mkdir IMPCdata.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IMPCdata.buildbin-libdir IMPCdata_1.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL IMPCdata_1.19.0.zip && rm IMPCdata_1.19.0.tar.gz IMPCdata_1.19.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 15606  100 15606    0     0   143k      0 --:--:-- --:--:-- --:--:--  152k

install for i386

* installing *source* package 'IMPCdata' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'IMPCdata'
    finding HTML links ... done
    getAlleles                              html  
    getGenes                                html  
    getIMPCDataset                          html  
    getIMPCTable                            html  
    getName                                 html  
    getParameters                           html  
    getPhenCenters                          html  
    getPipelines                            html  
    getProcedures                           html  
    getStrains                              html  
    getZygosities                           html  
    printAlleles                            html  
    printGenes                              html  
    printParameters                         html  
    printPhenCenters                        html  
    printPipelines                          html  
    printProcedures                         html  
    printStrains                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IMPCdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IMPCdata' as IMPCdata_1.19.0.zip
* DONE (IMPCdata)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'IMPCdata' successfully unpacked and MD5 sums checked