Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BEclear on tokay2

This page was generated on 2019-04-08 11:40:30 -0400 (Mon, 08 Apr 2019).

Package 123/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEclear 1.99.1
David Rasp
Snapshot Date: 2019-04-07 17:01:41 -0400 (Sun, 07 Apr 2019)
URL: https://git.bioconductor.org/packages/BEclear
Branch: master
Last Commit: f20bd3d
Last Changed Date: 2019-04-07 12:36:41 -0400 (Sun, 07 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]YES, new version is higher than in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: BEclear
Version: 1.99.1
Command: rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_1.99.1.tar.gz
StartedAt: 2019-04-08 07:45:57 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 07:46:35 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 38.0 seconds
RetCode: 0
Status:  OK  
PackageFile: BEclear_1.99.1.zip
PackageFileSize: 1.113 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_1.99.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'BEclear' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c localLoss.cpp -o localLoss.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/00LOCK-BEclear/00new/BEclear/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BEclear'
    finding HTML links ... done
    BEclear-example-methylation-data        html  
    BEclear-example-sample-data             html  
    BEclear-package                         html  
    calcBatchEffects                        html  
    calcBatchEffectsForBatch                html  
    calcBlockFrame                          html  
    calcPositions                           html  
    calcScore                               html  
    calcSummary                             html  
    clearBEgenes                            html  
    combineBlocks                           html  
    correctBatchEffect                      html  
    countValuesToPredict                    html  
    ex.corrected.data                       html  
    findOutsideValues                       html  
    gdepoch                                 html  
    imputeMissingData                       html  
    imputeMissingDataForBlock               html  
    loss                                    html  
    makeBoxplot                             html  
    preprocessBEclear                       html  
    replaceOutsideValues                    html  
    runGradientDescent                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BEclear' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c localLoss.cpp -o localLoss.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BEclear.dll tmp.def RcppExports.o localLoss.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BEclear.buildbin-libdir/BEclear/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BEclear' as BEclear_1.99.1.zip
* DONE (BEclear)