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INSTALL report for ACME on malbec2

This page was generated on 2019-04-09 11:25:29 -0400 (Tue, 09 Apr 2019).

Package 14/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.39.0
Sean Davis
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/ACME
Branch: master
Last Commit: 67dae98
Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: ACME
Version: 2.39.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ACME
StartedAt: 2019-04-08 18:17:53 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:18:01 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 8.0 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ACME
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘ACME’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c windowChisq.c -o windowChisq.o
windowChisq.c: In function ‘windowChisq’:
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
    firstprobe>0) {
    ˜˜˜˜˜˜˜˜˜˜^˜
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
    lastprobe<(na-1)) {
    ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
windowChisq.c:21:11: warning: unused variable ‘xa’ [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^˜
windowChisq.c: At top level:
windowChisq.c:86:20: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for ‘callMethods[0].fun’)
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o ACME.so windowChisq.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-ACME/00new/ACME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ACME)