Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:27:22 -0400 (Sat, 13 Apr 2019).
Package 576/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gcapc 1.6.0 Mingxiang Teng
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: gcapc |
Version: 1.6.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/gcapc_1.6.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL gcapc_1.6.0.zip && rm gcapc_1.6.0.tar.gz gcapc_1.6.0.zip |
StartedAt: 2019-04-12 20:08:13 -0400 (Fri, 12 Apr 2019) |
EndedAt: 2019-04-12 20:08:45 -0400 (Fri, 12 Apr 2019) |
EllapsedTime: 31.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/gcapc_1.6.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL gcapc_1.6.0.zip && rm gcapc_1.6.0.tar.gz gcapc_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3418k 100 3418k 0 0 19.3M 0 --:--:-- --:--:-- --:--:-- 19.8M install for i386 * installing *source* package 'gcapc' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gcapc' finding HTML links ... done bindWidth html gcEffects html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcEffects.Rd:92: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcEffects.Rd:95: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcEffects.Rd:97: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic gcapcPeaks html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcapcPeaks.Rd:47: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcapcPeaks.Rd:50: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/gcapcPeaks.Rd:52: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic peaksCAT html read5endCoverage html refinePeaks html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refinePeaks.Rd:42: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refinePeaks.Rd:45: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refinePeaks.Rd:47: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic refineSites html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refineSites.Rd:93: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refineSites.Rd:96: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUZWOE8/R.INSTALL1fe8be36e75/gcapc/man/refineSites.Rd:98: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'gcapc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'gcapc' as gcapc_1.6.0.zip * DONE (gcapc) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'gcapc' successfully unpacked and MD5 sums checked In R CMD INSTALL