Stefano de Pretis
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: RELEASE_3_8 |
| Last Commit: 4bd62ca |
| Last Changed Date: 2019-04-04 06:36:01 -0400 (Thu, 04 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:58:49 -0400 (Tue, 16 Apr 2019).
| Package 778/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.12.2 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: INSPEcT |
| Version: 1.12.2 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.12.2.tar.gz |
| StartedAt: 2019-04-16 00:42:41 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 00:58:22 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 941.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.12.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/INSPEcT.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.12.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 181.720 0.963 184.363
makeSimDataset 90.490 5.443 88.050
plotMA 49.337 23.110 32.003
INSPEcT_diffsteady-class 48.828 21.491 32.012
compareSteady 49.525 20.453 31.023
quantifyExpressionsFromBAMs 48.149 13.271 61.901
rocCurve 57.531 0.164 58.480
makeSimModel 51.218 0.478 51.988
rocThresholds 50.201 0.137 50.816
newINSPEcT 27.642 8.317 17.899
processingDelay 22.297 5.398 21.353
quantifyExpressionsFromTrCounts 19.671 0.112 19.957
compareSteadyNoNascent 7.716 0.272 8.012
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
| name | user | system | elapsed | |
| AIC-INSPEcT-method | 0.209 | 0.010 | 0.225 | |
| Extract | 0.307 | 0.006 | 0.313 | |
| INSPEcT-shinyApps | 0.000 | 0.000 | 0.001 | |
| INSPEcT_diffsteady-class | 48.828 | 21.491 | 32.012 | |
| chisqmodel | 0.237 | 0.026 | 0.264 | |
| chisqtest | 0.199 | 0.005 | 0.204 | |
| combine | 0.573 | 0.047 | 0.620 | |
| compareSteady | 49.525 | 20.453 | 31.023 | |
| compareSteadyNoNascent | 7.716 | 0.272 | 8.012 | |
| geneClass | 0.274 | 0.011 | 0.284 | |
| getModel | 0.224 | 0.005 | 0.230 | |
| inHeatmap | 0.276 | 0.006 | 0.283 | |
| labeledSF | 0.203 | 0.003 | 0.206 | |
| logLik | 0.195 | 0.001 | 0.196 | |
| makeModelRates | 1.419 | 0.011 | 1.436 | |
| makeSimDataset | 90.490 | 5.443 | 88.050 | |
| makeSimModel | 51.218 | 0.478 | 51.988 | |
| modelRates | 181.720 | 0.963 | 184.363 | |
| modelSelection | 0.473 | 0.005 | 0.478 | |
| modelingParams | 0.351 | 0.008 | 0.359 | |
| nGenes | 0.186 | 0.005 | 0.190 | |
| nTpts | 0.156 | 0.003 | 0.159 | |
| newINSPEcT | 27.642 | 8.317 | 17.899 | |
| plotGene | 0.297 | 0.026 | 0.326 | |
| plotMA | 49.337 | 23.110 | 32.003 | |
| processingDelay | 22.297 | 5.398 | 21.353 | |
| quantifyExpressionsFromBAMs | 48.149 | 13.271 | 61.901 | |
| quantifyExpressionsFromTrCounts | 19.671 | 0.112 | 19.957 | |
| ratePvals | 0.282 | 0.009 | 0.293 | |
| ratesFirstGuess | 0.213 | 0.006 | 0.222 | |
| ratesFirstGuessVar | 0.239 | 0.006 | 0.249 | |
| removeModel | 0.273 | 0.004 | 0.279 | |
| rocCurve | 57.531 | 0.164 | 58.480 | |
| rocThresholds | 50.201 | 0.137 | 50.816 | |
| split | 0.271 | 0.009 | 0.286 | |
| tpts | 0.199 | 0.006 | 0.210 | |
| viewModelRates | 0.214 | 0.006 | 0.223 | |