Package: maSigPro

Version: 1.52.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings maSigPro_1.52.0.tar.gz

StartedAt: 2018-10-16 01:40:26 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 01:42:49 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 143.4 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings maSigPro_1.52.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/maSigPro.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.52.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
tableDS       11.772  0.028  11.833
seeDS         11.044  0.032  11.117
IsoModel      10.816  0.016  10.883
getDS         10.692  0.012  10.763
getDSPatterns 10.668  0.004  10.731
IsoPlot       10.640  0.000  10.662
PodiumChange  10.476  0.000  10.491
ISOdesign     10.208  0.004  10.227
ISOdata       10.096  0.040  10.151
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL maSigPro
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘maSigPro’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded
* DONE (maSigPro)

name	user	system	elapsed
ISOdata	10.096	0.040	10.151
ISOdesign	10.208	0.004	10.227
IsoModel	10.816	0.016	10.883
IsoPlot	10.640	0.000	10.662
NBdata	0.000	0.000	0.002
NBdesign	0.004	0.000	0.002
PlotGroups	0.028	0.000	0.031
PlotProfiles	0.012	0.008	0.018
PodiumChange	10.476	0.000	10.491
T.fit	4.640	0.004	4.651
average.rows	0.004	0.000	0.002
data.abiotic	0.004	0.000	0.004
edesign.abiotic	0.004	0.000	0.002
edesignCT	0.000	0.000	0.001
edesignDR	0.000	0.000	0.001
get.siggenes	2.148	0.000	2.150
getDS	10.692	0.012	10.763
getDSPatterns	10.668	0.004	10.731
i.rank	0	0	0
maSigPro	3.496	0.012	3.513
maSigProUsersGuide	0.004	0.008	0.011
make.design.matrix	0.004	0.004	0.009
p.vector	1.624	0.012	1.636
position	0	0	0
reg.coeffs	0.000	0.000	0.001
see.genes	1.124	0.048	1.324
seeDS	11.044	0.032	11.117
stepback	0.020	0.004	0.024
stepfor	0.092	0.004	0.096
suma2Venn	0.056	0.004	0.089
tableDS	11.772	0.028	11.833
two.ways.stepback	0.068	0.000	0.070
two.ways.stepfor	0.088	0.000	0.091