Package: funtooNorm

Version: 1.4.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:funtooNorm.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings funtooNorm_1.4.0.tar.gz

StartedAt: 2018-10-16 00:30:23 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 00:35:41 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 317.6 seconds

RetCode: 0

Status:  OK

CheckDir: funtooNorm.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:funtooNorm.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings funtooNorm_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/funtooNorm.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘funtooNorm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘funtooNorm’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘funtooNorm’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
plotValidationGraph   22.960  0.088  23.076
getNormBeta           19.072  0.152  19.241
getSnpM               18.260  0.144  18.414
getNormM              17.580  0.080  17.680
funtooNorm            17.376  0.088  17.480
fromRGChannelSet      15.996  0.408  16.906
getGRanges            12.748  0.076  12.839
getRawBeta            10.392  0.056  10.452
show-SampleSet-method  8.084  0.028   8.119
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL funtooNorm
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘funtooNorm’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (funtooNorm)

name	user	system	elapsed
SampleSet-class	0.004	0.000	0.001
agreement	0.000	0.000	0.002
fromRGChannelSet	15.996	0.408	16.906
funtooNorm	17.376	0.088	17.480
getGRanges	12.748	0.076	12.839
getNormBeta	19.072	0.152	19.241
getNormM	17.58	0.08	17.68
getRawBeta	10.392	0.056	10.452
getSnpM	18.260	0.144	18.414
plotValidationGraph	22.960	0.088	23.076
show-SampleSet-method	8.084	0.028	8.119