VJ Carey
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BiocOncoTK |
| Branch: RELEASE_3_7 |
| Last Commit: 5f05421 |
| Last Changed Date: 2018-08-24 09:38:44 -0400 (Fri, 24 Aug 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:31:40 -0400 (Wed, 17 Oct 2018).
| Package 131/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocOncoTK 1.0.3 VJ Carey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiocOncoTK |
| Version: 1.0.3 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:BiocOncoTK.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings BiocOncoTK_1.0.3.tar.gz |
| StartedAt: 2018-10-15 22:47:04 -0400 (Mon, 15 Oct 2018) |
| EndedAt: 2018-10-15 22:48:28 -0400 (Mon, 15 Oct 2018) |
| EllapsedTime: 84.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BiocOncoTK.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:BiocOncoTK.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings BiocOncoTK_1.0.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/BiocOncoTK.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK * this is package ‘BiocOncoTK’ version ‘1.0.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BiocOncoTK’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .rainfall.bq.df: no visible global function definition for ‘seqlengths’ .rainfall.maeGRL.df: no visible global function definition for ‘genome’ .rainfall.maeGRL.df: no visible global function definition for ‘seqlengths’ checkCache_patel: no visible global function definition for ‘BiocFileCache’ chrbounds_basic: no visible global function definition for ‘seqlengths’ rainfall: no visible global function definition for ‘genome’ rainfall: no visible global function definition for ‘ggplot’ rainfall: no visible global function definition for ‘aes’ rainfall: no visible global function definition for ‘geom_point’ rainfall: no visible global function definition for ‘theme’ rainfall: no visible global function definition for ‘element_blank’ rainfall: no visible global function definition for ‘ylab’ rainfall: no visible global function definition for ‘xlab’ rainfall: no visible global function definition for ‘geom_vline’ rainfall: no visible global function definition for ‘scale_x_continuous’ rainfall: no visible global function definition for ‘ggtitle’ rainfall: no visible global function definition for ‘geom_text’ Undefined global functions or variables: BiocFileCache aes element_blank genome geom_point geom_text geom_vline ggplot ggtitle scale_x_continuous seqlengths theme xlab ylab * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.7-bioc/meat/BiocOncoTK.Rcheck/00check.log’ for details.
BiocOncoTK.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL BiocOncoTK ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘BiocOncoTK’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BiocOncoTK)
BiocOncoTK.Rcheck/BiocOncoTK-Ex.timings
| name | user | system | elapsed | |
| CCLE_DRUG_BROAD | 0.076 | 0.012 | 0.087 | |
| TcgaMutCounts | 0.000 | 0.000 | 0.001 | |
| TcgaNIndWithAnyMut | 0 | 0 | 0 | |
| annotTabs | 0 | 0 | 0 | |
| brcaMAE | 4.596 | 0.176 | 4.784 | |
| cell_70138 | 0.000 | 0.000 | 0.001 | |
| clueDemos | 0.004 | 0.000 | 0.000 | |
| clueServiceNames | 0.000 | 0.000 | 0.001 | |
| darmGBMcls | 0.308 | 0.016 | 0.326 | |
| icd10_c | 0.028 | 0.012 | 0.041 | |
| loadPatel | 0.000 | 0.000 | 0.001 | |
| oncoPrintISB | 0.004 | 0.000 | 0.001 | |
| pancan.clin.varnames | 0.012 | 0.000 | 0.013 | |
| pancan_BQ | 0 | 0 | 0 | |
| pancan_app | 0.000 | 0.000 | 0.001 | |
| pancan_clinicalTabVarnames | 0.000 | 0.000 | 0.001 | |
| pancan_longname | 0.000 | 0.004 | 0.000 | |
| pancan_sampTypeMap | 0.000 | 0.000 | 0.001 | |
| pancan_tabulate | 0 | 0 | 0 | |
| pertClasses | 0.000 | 0.000 | 0.001 | |
| pert_70138 | 0.000 | 0.000 | 0.001 | |
| query_clue | 0.000 | 0.004 | 0.001 | |
| utils | 0.780 | 0.036 | 0.834 | |