Package: rHVDM

Version: 1.44.0

Command: rm -rf rHVDM.buildbin-libdir rHVDM.Rcheck && mkdir rHVDM.buildbin-libdir rHVDM.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rHVDM.buildbin-libdir rHVDM_1.44.0.tar.gz >rHVDM.Rcheck\00install.out 2>&1 && cp rHVDM.Rcheck\00install.out rHVDM-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rHVDM.buildbin-libdir --install="check:rHVDM-install.out" --force-multiarch --no-vignettes --timings rHVDM_1.44.0.tar.gz

StartedAt: 2018-04-12 02:41:03 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 02:43:07 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 124.2 seconds

RetCode: 0

Status:  OK

CheckDir: rHVDM.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf rHVDM.buildbin-libdir rHVDM.Rcheck && mkdir rHVDM.buildbin-libdir rHVDM.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rHVDM.buildbin-libdir rHVDM_1.44.0.tar.gz >rHVDM.Rcheck\00install.out 2>&1 && cp rHVDM.Rcheck\00install.out rHVDM-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rHVDM.buildbin-libdir --install="check:rHVDM-install.out" --force-multiarch --no-vignettes --timings rHVDM_1.44.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/rHVDM.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rHVDM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rHVDM' version '1.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rHVDM' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.bin.ut: no visible global function definition for 'quantile'
.binb.ut: no visible global function definition for 'quantile'
.geneoutput: no visible global function definition for 'png'
.geneoutput: no visible global function definition for 'par'
.geneoutput: no visible global function definition for 'plot'
.geneoutput: no visible global function definition for 'arrows'
.geneoutput: no visible global function definition for 'lines'
.geneoutput: no visible global function definition for 'dev.off'
.greport: no visible global function definition for 'runif'
.parameteroutput: no visible global function definition for 'png'
.parameteroutput: no visible global function definition for 'par'
.parameteroutput: no visible global function definition for 'arrows'
.parameteroutput: no visible global function definition for 'dev.off'
.parameteroutput: no visible global function definition for 'plot'
.parameteroutput: no visible global function definition for 'lines'
.parameteroutput: no visible global function definition for 'cov2cor'
.parameteroutputg: no visible global function definition for 'png'
.parameteroutputg: no visible global function definition for 'par'
.parameteroutputg: no visible global function definition for 'arrows'
.parameteroutputg: no visible global function definition for 'dev.off'
.parameteroutputg: no visible global function definition for 'cov2cor'
.parameteroutputg.nl: no visible global function definition for 'png'
.parameteroutputg.nl: no visible global function definition for 'par'
.parameteroutputg.nl: no visible global function definition for
  'arrows'
.parameteroutputg.nl: no visible global function definition for
  'dev.off'
.parameteroutputg.nl: no visible global function definition for
  'cov2cor'
.scoreoutput: no visible global function definition for 'qchisq'
.scoreoutput: no visible global function definition for 'png'
.scoreoutput: no visible global function definition for 'par'
.scoreoutput: no visible global function definition for 'plot'
.scoreoutput: no visible global function definition for 'dchisq'
.scoreoutput: no visible global function definition for 'points'
.scoreoutput: no visible global function definition for 'qnorm'
.scoreoutput: no visible global function definition for 'lines'
.scoreoutput: no visible global function definition for 'dev.off'
.scorout: no visible global function definition for 'pchisq'
.screenoutput: no visible global function definition for 'png'
.screenoutput: no visible global function definition for 'plot'
.screenoutput: no visible global function definition for 'lines'
.screenoutput: no visible global function definition for 'dev.off'
.sreport: no visible global function definition for 'runif'
.treport: no visible global function definition for 'runif'
Undefined global functions or variables:
  arrows cov2cor dchisq dev.off lines par pchisq plot png points qchisq
  qnorm quantile runif
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "arrows", "lines", "par", "plot", "points")
  importFrom("stats", "cov2cor", "dchisq", "pchisq", "qchisq", "qnorm",
             "quantile", "runif")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
screening.nl 8.39   0.00    8.39
fitgene.nl   7.48   0.05    7.53
training.nl  7.36   0.05    7.41
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
screening.nl 8.89   0.10    8.98
fitgene.nl   8.11   0.07    8.17
training.nl  7.71   0.03    7.74
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/rHVDM.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'rHVDM' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'rHVDM'
    finding HTML links ... done
    HVDMcheck                               html  
    HVDMreport                              html  
    estimerrors                             html  
    fitgene                                 html  
    fitgene.lin                             html  
    fitgene.nl                              html  
    fiveGyMAS5                              html  
    genestoscreen                           html  
    leastnoisychips                         html  
    p53traingenes                           html  
    rHVDMplattforms                         html  
    screening                               html  
    screening.nl                            html  
    training                                html  
    training.nl                             html  
    twodosesMAS5                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'rHVDM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rHVDM' as rHVDM_1.44.0.zip
* DONE (rHVDM)
In R CMD INSTALL
In R CMD INSTALL