Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:18:20 -0400 (Thu, 12 Apr 2018).
Package 1102/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
quantsmooth 1.44.0 Jan Oosting
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: quantsmooth |
Version: 1.44.0 |
Command: rm -rf quantsmooth.buildbin-libdir quantsmooth.Rcheck && mkdir quantsmooth.buildbin-libdir quantsmooth.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=quantsmooth.buildbin-libdir quantsmooth_1.44.0.tar.gz >quantsmooth.Rcheck\00install.out 2>&1 && cp quantsmooth.Rcheck\00install.out quantsmooth-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=quantsmooth.buildbin-libdir --install="check:quantsmooth-install.out" --force-multiarch --no-vignettes --timings quantsmooth_1.44.0.tar.gz |
StartedAt: 2018-04-12 02:23:57 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:25:02 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 64.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: quantsmooth.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf quantsmooth.buildbin-libdir quantsmooth.Rcheck && mkdir quantsmooth.buildbin-libdir quantsmooth.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=quantsmooth.buildbin-libdir quantsmooth_1.44.0.tar.gz >quantsmooth.Rcheck\00install.out 2>&1 && cp quantsmooth.Rcheck\00install.out quantsmooth-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=quantsmooth.buildbin-libdir --install="check:quantsmooth-install.out" --force-multiarch --no-vignettes --timings quantsmooth_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/quantsmooth.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'quantsmooth/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'quantsmooth' version '1.44.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'quantsmooth' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'grid' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getChrombands: no visible global function definition for 'data' drawSimpleChrom: no visible global function definition for 'rect' drawSimpleChrom: no visible global function definition for 'lines' drawSimpleChrom: no visible global function definition for 'yinch' drawSimpleChrom: no visible global function definition for 'symbols' drawSimpleChrom: no visible global function definition for 'xinch' grid.chromosome: no visible global function definition for 'gray' grid.chromosome: no visible global function definition for 'pushViewport' grid.chromosome: no visible global function definition for 'viewport' grid.chromosome: no visible global function definition for 'grid.rect' grid.chromosome: no visible global function definition for 'gpar' grid.chromosome: no visible global function definition for 'grid.circle' grid.chromosome: no visible global function definition for 'unit' grid.chromosome: no visible global function definition for 'grid.text' grid.chromosome: no visible global function definition for 'popViewport' lengthChromosome: no visible global function definition for 'aggregate' paintCytobands: no visible global function definition for 'gray' paintCytobands: no visible global function definition for 'rect' paintCytobands: no visible global function definition for 'yinch' paintCytobands: no visible global function definition for 'symbols' paintCytobands: no visible global function definition for 'text' paintCytobands: no visible global function definition for 'xinch' plotSmoothed: no visible global function definition for 'plot' plotSmoothed: no visible global function definition for 'abline' plotSmoothed: no visible global function definition for 'points' plotSmoothed: no visible global function definition for 'lines' prepareGenomePlot: no visible global function definition for 'par' prepareGenomePlot: no visible global function definition for 'plot' prepareGenomePlot: no visible global function definition for 'axis' prepareGenomePlot: no visible global function definition for 'lines' qs.grid.semicircle: no visible global function definition for 'grid.polygon' qs.semicircle: no visible global function definition for 'polygon' qs.semicircle: no visible global function definition for 'lines' Undefined global functions or variables: abline aggregate axis data gpar gray grid.circle grid.polygon grid.rect grid.text lines par plot points polygon popViewport pushViewport rect symbols text unit viewport xinch yinch Consider adding importFrom("grDevices", "gray") importFrom("graphics", "abline", "axis", "lines", "par", "plot", "points", "polygon", "rect", "symbols", "text", "xinch", "yinch") importFrom("stats", "aggregate") importFrom("utils", "data") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/quantsmooth.Rcheck/00check.log' for details.
quantsmooth.Rcheck/00install.out
install for i386 * installing *source* package 'quantsmooth' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'quantsmooth' finding HTML links ... done Chromosome14 html chrom.bands html drawSimpleChrom html getChangedIdx html getChangedRegions html getLambdaMin html grid.chromosome html lengthChromosome html numericCHR html paintCytobands html plotChromosome html plotSmoothed html position2Cytoband html prepareGenomePlot html quantsmooth html quantsmooth.cv html quantsmooth.seg html scaleto html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'quantsmooth' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'quantsmooth' as quantsmooth_1.44.0.zip * DONE (quantsmooth) In R CMD INSTALL In R CMD INSTALL
quantsmooth.Rcheck/examples_i386/quantsmooth-Ex.timings
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quantsmooth.Rcheck/examples_x64/quantsmooth-Ex.timings
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