Package: paxtoolsr

Version: 1.12.0

Command: chmod a+r paxtoolsr -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data paxtoolsr

StartedAt: 2018-04-11 20:28:13 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 20:28:47 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 33.4 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r paxtoolsr -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data paxtoolsr
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* checking for file 'paxtoolsr/DESCRIPTION' ... OK
* preparing 'paxtoolsr':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: rJava
Loading required package: XML
2018-04-11 20:28:41,499 1063 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2018-04-11 20:28:41,890 1454 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)
Quitting from lines 170-172 (using_paxtoolsr.Rmd) 
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
Failed to connect to www.pathwaycommons.org port 80: Connection refused
Execution halted