Gabriele Sales
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/graphite |
| Branch: RELEASE_3_6 |
| Last Commit: 2d684bd |
| Last Changed Date: 2017-12-14 11:04:59 -0400 (Thu, 14 Dec 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:09 -0400 (Thu, 12 Apr 2018).
| Package 615/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| graphite 1.24.1 Gabriele Sales
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: graphite |
| Version: 1.24.1 |
| Command: rm -rf graphite.buildbin-libdir graphite.Rcheck && mkdir graphite.buildbin-libdir graphite.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=graphite.buildbin-libdir graphite_1.24.1.tar.gz >graphite.Rcheck\00install.out 2>&1 && cp graphite.Rcheck\00install.out graphite-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=graphite.buildbin-libdir --install="check:graphite-install.out" --force-multiarch --no-vignettes --timings graphite_1.24.1.tar.gz |
| StartedAt: 2018-04-12 00:32:37 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 00:37:24 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 286.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graphite.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf graphite.buildbin-libdir graphite.Rcheck && mkdir graphite.buildbin-libdir graphite.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=graphite.buildbin-libdir graphite_1.24.1.tar.gz >graphite.Rcheck\00install.out 2>&1 && cp graphite.Rcheck\00install.out graphite-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=graphite.buildbin-libdir --install="check:graphite-install.out" --force-multiarch --no-vignettes --timings graphite_1.24.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/graphite.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graphite/DESCRIPTION' ... OK
* this is package 'graphite' version '1.24.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graphite' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 30 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
runSPIA 10.65 0.77 11.50
runClipper 9.29 0.36 9.73
as.list.DeprecatedPathwayList 5.01 0.25 5.27
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
runClipper 12.57 0.35 12.91
runSPIA 9.44 0.56 10.22
as.list.DeprecatedPathwayList 6.82 0.22 7.05
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/graphite.Rcheck/00check.log'
for details.
graphite.Rcheck/00install.out
install for i386
* installing *source* package 'graphite' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'graphite'
finding HTML links ... done
DeprecatedPathwayList-class html
Pathway-class html
PathwayList-class html
Pathways-class html
as.list.DeprecatedPathwayList html
as.list.PathwayList html
biocarta html
buildPathway html
convertIdentifiers html
cytoscapePlot html
humancyc html
kegg html
nci html
panther html
pathwayDatabases html
pathwayGraph html
pathways html
pharmgkb html
prepareSPIA html
reactome html
runClipper html
runSPIA html
runTopologyGSA html
smpdb html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'graphite' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graphite' as graphite_1.24.1.zip
* DONE (graphite)
In R CMD INSTALL
In R CMD INSTALL
|
graphite.Rcheck/tests_i386/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graphite)
>
> test_check("graphite")
== testthat results ===========================================================
OK: 88 SKIPPED: 1 FAILED: 0
>
> proc.time()
user system elapsed
29.78 1.14 33.50
|
graphite.Rcheck/tests_x64/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graphite)
>
> test_check("graphite")
== testthat results ===========================================================
OK: 88 SKIPPED: 1 FAILED: 0
>
> proc.time()
user system elapsed
30.50 1.09 32.20
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graphite.Rcheck/examples_i386/graphite-Ex.timings
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graphite.Rcheck/examples_x64/graphite-Ex.timings
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