Peter Murakami
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/charm |
| Branch: RELEASE_3_6 |
| Last Commit: 5700d84 |
| Last Changed Date: 2017-10-30 12:39:28 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:04 -0400 (Thu, 12 Apr 2018).
| Package 209/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| charm 2.24.0 Peter Murakami
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: charm |
| Version: 2.24.0 |
| Command: rm -rf charm.buildbin-libdir && mkdir charm.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=charm.buildbin-libdir --merge-multiarch charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL charm_2.24.0.zip && rm charm_2.24.0.tar.gz charm_2.24.0.zip |
| StartedAt: 2018-04-11 18:50:14 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:51:16 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 62.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf charm.buildbin-libdir && mkdir charm.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=charm.buildbin-libdir --merge-multiarch charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL charm_2.24.0.zip && rm charm_2.24.0.tar.gz charm_2.24.0.zip
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install for i386
* installing *source* package 'charm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'charm'
finding HTML links ... done
bgAdjust html
clusterMaker html
cmdsplot html
controlQC html
countGC html
cpgdensity html
dmrFdr html
dmrFind html
dmrFinder html
dmrPlot html
getControlIndex html
maxDensity html
methPercent html
methp html
normalizeBetweenSamples html
normalizeWithinSamples html
plotDMRs html
plotDensity html
plotRegions html
pmQuality html
qcReport html
qval html
readCharm html
regionMatch html
regionPlot html
spatialAdjust html
validatePd html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'charm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'charm' as charm_2.24.0.zip
* DONE (charm)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'charm' successfully unpacked and MD5 sums checked
In R CMD INSTALL