Aaron Lun
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/beachmat |
| Branch: RELEASE_3_6 |
| Last Commit: 6bd57b9 |
| Last Changed Date: 2017-11-25 11:15:16 -0400 (Sat, 25 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:16:28 -0400 (Thu, 12 Apr 2018).
| Package 101/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| beachmat 1.0.2 Aaron Lun
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: beachmat |
| Version: 1.0.2 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL beachmat |
| StartedAt: 2018-04-11 18:02:49 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:03:57 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 67.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL beachmat
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.6-bioc/R/library’
* installing *source* package ‘beachmat’ ...
** libs
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c HDF5_utils.cpp -o HDF5_utils.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c any_matrix.cpp -o any_matrix.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c character_matrix.cpp -o character_matrix.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c character_output.cpp -o character_output.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c find_chunks.cpp -o find_chunks.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c functions.cpp -o functions.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c integer_matrix.cpp -o integer_matrix.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c logical_matrix.cpp -o logical_matrix.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c numeric_matrix.cpp -o numeric_matrix.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c output_param.cpp -o output_param.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c repacker.cpp -o repacker.o
g++ -std=gnu++11 -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/include" -I/usr/local/include -fpic -g -O2 -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o beachmat.so HDF5_utils.o any_matrix.o character_matrix.o character_output.o find_chunks.o functions.o integer_matrix.o logical_matrix.o numeric_matrix.o output_param.o repacker.o utils.o /home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/lib/libhdf5.a /home/biocbuild/bbs-3.6-bioc/R/library/Rhdf5lib/lib/libsz.a -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
ar rc libbeachmat.a any_matrix.o character_matrix.o character_output.o integer_matrix.o logical_matrix.o numeric_matrix.o utils.o HDF5_utils.o output_param.o
g++ -std=gnu++11 -shared -L/usr/local/lib -o libbeachmat.so any_matrix.o character_matrix.o character_output.o integer_matrix.o logical_matrix.o numeric_matrix.o utils.o HDF5_utils.o output_param.o `echo 'Rhdf5lib::pkgconfig("PKG_CXX_LIBS")'| "/home/biocbuild/bbs-3.6-bioc/R/bin/R" --vanilla --slave`
mkdir -p "/home/biocbuild/bbs-3.6-bioc/R/library/beachmat/lib" "/home/biocbuild/bbs-3.6-bioc/R/library/beachmat/include/beachmat"
cp any_matrix.h utils.h beachmat.h HDF5_utils.h output_param.h Psymm_matrix.h HDF5_matrix.h Csparse_matrix.h dense_matrix.h simple_matrix.h Rle_matrix.h Input_matrix.h simple_output.h Csparse_output.h HDF5_output.h Output_matrix.h LIN_matrix.h LIN_methods.h LIN_output.h LIN_outfun.h logical_matrix.h integer_matrix.h character_matrix.h numeric_matrix.h character_output.h "/home/biocbuild/bbs-3.6-bioc/R/library/beachmat/include/beachmat"
mv libbeachmat.* "/home/biocbuild/bbs-3.6-bioc/R/library/beachmat/lib"
installing to /home/biocbuild/bbs-3.6-bioc/R/library/beachmat/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (beachmat)