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INSTALL report for TCC on tokay1

This page was generated on 2018-04-12 13:23:14 -0400 (Thu, 12 Apr 2018).

Package 1386/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCC 1.18.0
Jianqiang Sun
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/TCC
Branch: RELEASE_3_6
Last Commit: d13750f
Last Changed Date: 2017-10-30 12:40:07 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TCC
Version: 1.18.0
Command: rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TCC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TCC.buildbin-libdir --merge-multiarch TCC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TCC_1.18.0.zip && rm TCC_1.18.0.tar.gz TCC_1.18.0.zip
StartedAt: 2018-04-11 18:45:02 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:46:26 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 84.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TCC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TCC.buildbin-libdir --merge-multiarch TCC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TCC_1.18.0.zip  && rm TCC_1.18.0.tar.gz TCC_1.18.0.zip
###
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install for i386

* installing *source* package 'TCC' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
  converting help for package 'TCC'
    finding HTML links ... done
    ROKU                                    html  
    TCC-class                               html  
    TCC                                     html  
    WAD                                     html  
    arab                                    html  
    calcAUCValue                            html  
    calcNormFactors                         html  
    clusterSample                           html  
    estimateDE                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/estimateDE.Rd:66: missing file link 'glmLRT'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/estimateDE.Rd:73: missing file link 'glmLRT'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/estimateDE.Rd:81: missing file link 'getPriors.NB'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/estimateDE.Rd:130: missing file link 'glmLRT'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/estimateDE.Rd:154: missing file link 'getPriors.NB'
    filterLowCountGenes                     html  
    getNormalizedData                       html  
    getResult                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgFHT56/R.INSTALL1474adf6f51/TCC/man/getResult.Rd:20: missing file link 'plot'
    hypoData                                html  
    hypoData_mg                             html  
    hypoData_ts                             html  
    makeFCMatrix                            html  
    nakai                                   html  
    plot.TCC                                html  
    plotFCPseudocolor                       html  
    simulateReadCounts                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'TCC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCC' as TCC_1.18.0.zip
* DONE (TCC)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'TCC' successfully unpacked and MD5 sums checked
In R CMD INSTALL