Hamed Haselimashhadi
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/PhenStat |
| Branch: RELEASE_3_6 |
| Last Commit: a095831 |
| Last Changed Date: 2017-10-30 12:40:10 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:40 -0400 (Thu, 12 Apr 2018).
| Package 1032/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PhenStat 2.14.0 Hamed Haselimashhadi
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: PhenStat |
| Version: 2.14.0 |
| Command: cd PhenStat.buildbin-libdir/PhenStat && zip -r ../../PhenStat_2.14.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:56:39 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:57:10 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: PhenStat_2.14.0.zip |
| PackageFileSize: 5.086 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd PhenStat.buildbin-libdir/PhenStat && zip -r ../../PhenStat_2.14.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: DESCRIPTION (332 bytes security) (deflated 38%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 62%) adding: doc/PhenStat.pdf (332 bytes security) (deflated 9%) adding: doc/PhenStat.R (332 bytes security) (deflated 85%) adding: doc/PhenStat.Rnw (332 bytes security) (deflated 73%) adding: doc/PhenStatUsersGuide.pdf (332 bytes security) (deflated 11%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/permutationTest.csv (332 bytes security) (deflated 79%) adding: extdata/test1.csv (332 bytes security) (deflated 85%) adding: extdata/test1_1sex.csv (332 bytes security) (deflated 82%) adding: extdata/test2.csv (332 bytes security) (deflated 80%) adding: extdata/test3.csv (332 bytes security) (deflated 84%) adding: extdata/test4.csv (332 bytes security) (deflated 82%) adding: extdata/test6_RR.csv (332 bytes security) (deflated 70%) adding: extdata/test7_TFE.csv (332 bytes security) (deflated 77%) adding: extdata/testLR.csv (332 bytes security) (deflated 94%) adding: extdata/test_categorical.csv (332 bytes security) (deflated 95%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 80%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/PhenStat.rdb (332 bytes security) (deflated 2%) adding: help/PhenStat.rdx (332 bytes security) (deflated 1%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 86%) adding: html/analysedDataset.html (332 bytes security) (deflated 48%) adding: html/analysedDatasetPhenList.html (332 bytes security) (deflated 47%) adding: html/analysedSubset.html (332 bytes security) (deflated 47%) adding: html/analysisResults.html (332 bytes security) (deflated 50%) adding: html/batchIn.html (332 bytes security) (deflated 46%) adding: html/boxplotResidualBatch.html (332 bytes security) (deflated 52%) adding: html/boxplotSexGenotype.html (332 bytes security) (deflated 60%) adding: html/boxplotSexGenotypeBatch.html (332 bytes security) (deflated 57%) adding: html/boxplotSexGenotypeBatchAdjusted.html (332 bytes security) (deflated 55%) adding: html/boxplotSexGenotypeResult.html (332 bytes security) (deflated 57%) adding: html/boxplotSexGenotypeWeightBatchAdjusted.html (332 bytes security) (deflated 55%) adding: html/categoricalBarplot.html (332 bytes security) (deflated 50%) adding: html/checkDataset.html (332 bytes security) (deflated 58%) adding: html/classificationTag.html (332 bytes security) (deflated 60%) adding: html/columnChecks.html (332 bytes security) (deflated 53%) adding: html/columnLevels.html (332 bytes security) (deflated 50%) adding: html/comparison.html (332 bytes security) (deflated 47%) adding: html/dataset.html (332 bytes security) (deflated 45%) adding: html/determiningLambda.html (332 bytes security) (deflated 54%) adding: html/dim.html (332 bytes security) (deflated 50%) adding: html/finalLRModel.html (332 bytes security) (deflated 57%) adding: html/finalModel.html (332 bytes security) (deflated 58%) adding: html/finalTFModel.html (332 bytes security) (deflated 59%) adding: html/FisherExactTest.html (332 bytes security) (deflated 57%) adding: html/formulaDeterminingLambda.html (332 bytes security) (deflated 55%) adding: html/generateGraphs.html (332 bytes security) (deflated 53%) adding: html/getColumn.html (332 bytes security) (deflated 45%) adding: html/getColumnBatchAdjusted.html (332 bytes security) (deflated 47%) adding: html/getColumnView.html (332 bytes security) (deflated 47%) adding: html/getColumnWeightBatchAdjusted.html (332 bytes security) (deflated 48%) adding: html/getCountMatrices.html (332 bytes security) (deflated 47%) adding: html/getDataset.html (332 bytes security) (deflated 45%) adding: html/getGenotypeEffect.html (332 bytes security) (deflated 49%) adding: html/getMatrix.html (332 bytes security) (deflated 46%) adding: html/getPercentageMatrix.html (332 bytes security) (deflated 48%) adding: html/getStat.html (332 bytes security) (deflated 46%) adding: html/getVariable.html (332 bytes security) (deflated 46%) adding: html/getVariables.html (332 bytes security) (deflated 46%) adding: html/hemiGenotype.html (332 bytes security) (deflated 49%) adding: html/htest-class.html (332 bytes security) (deflated 51%) adding: html/htestPhenStat-class.html (332 bytes security) (deflated 62%) adding: html/JSONOutput.html (332 bytes security) (deflated 59%) adding: html/LargeDataObject-class.html (332 bytes security) (deflated 51%) adding: html/LRDataset.html (332 bytes security) (deflated 52%) adding: html/matrixCount.html (332 bytes security) (deflated 47%) adding: html/method.html (332 bytes security) (deflated 45%) adding: html/methodText.html (332 bytes security) (deflated 45%) adding: html/modelFormula.html (332 bytes security) (deflated 52%) adding: html/modelFormulaLR.html (332 bytes security) (deflated 56%) adding: html/multipleBatches.html (332 bytes security) (deflated 47%) adding: html/noSexes.html (332 bytes security) (deflated 47%) adding: html/parameters.html (332 bytes security) (deflated 47%) adding: html/parserOutputSummary.html (332 bytes security) (deflated 50%) adding: html/parserOutputSummaryLR.html (332 bytes security) (deflated 51%) adding: html/parserOutputTFSummary.html (332 bytes security) (deflated 50%) adding: html/performReverseTransformation.html (332 bytes security) (deflated 55%) adding: html/performTransformation.html (332 bytes security) (deflated 55%) adding: html/PhenList-class.html (332 bytes security) (deflated 74%) adding: html/PhenList.html (332 bytes security) (deflated 67%) adding: html/PhenSmoothWin.html (332 bytes security) (deflated 66%) adding: html/PhenStatReport.html (332 bytes security) (deflated 68%) adding: html/PhenTestResult-class.html (332 bytes security) (deflated 73%) adding: html/PhenTestResult.html (332 bytes security) (deflated 69%) adding: html/plot.PhenList.html (332 bytes security) (deflated 64%) adding: html/plot.PhenTestResult.html (332 bytes security) (deflated 64%) adding: html/plotResidualPredicted.html (332 bytes security) (deflated 52%) adding: html/printLROutput.html (332 bytes security) (deflated 53%) adding: html/printTabStyle.html (332 bytes security) (deflated 57%) adding: html/pvalue.html (332 bytes security) (deflated 46%) adding: html/qqplotGenotype.html (332 bytes security) (deflated 52%) adding: html/qqplotRandomEffects.html (332 bytes security) (deflated 52%) adding: html/qqplotRotatedResiduals.html (332 bytes security) (deflated 52%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/recommendMethod.html (332 bytes security) (deflated 54%) adding: html/refGenotype.html (332 bytes security) (deflated 48%) adding: html/RRTest.html (332 bytes security) (deflated 56%) adding: html/scatterplotGenotypeWeight.html (332 bytes security) (deflated 58%) adding: html/scatterplotGenotypeWeightResult.html (332 bytes security) (deflated 58%) adding: html/scatterplotSexGenotypeBatch.html (332 bytes security) (deflated 58%) adding: html/scatterplotSexGenotypeBatchResult.html (332 bytes security) (deflated 59%) adding: html/setBatch.html (332 bytes security) (deflated 45%) adding: html/setGenotype.html (332 bytes security) (deflated 46%) adding: html/setMissingValue.html (332 bytes security) (deflated 47%) adding: html/setSex.html (332 bytes security) (deflated 44%) adding: html/setWeight.html (332 bytes security) (deflated 45%) adding: html/startLRModel.html (332 bytes security) (deflated 56%) adding: html/startModel.html (332 bytes security) (deflated 61%) adding: html/startTFModel.html (332 bytes security) (deflated 60%) adding: html/subsetText.html (332 bytes security) (deflated 46%) adding: html/summaryOutput.html (332 bytes security) (deflated 55%) adding: html/summaryPhenListResult.html (332 bytes security) (deflated 55%) adding: html/testDataset.html (332 bytes security) (deflated 67%) adding: html/testFinalLRModel.html (332 bytes security) (deflated 50%) adding: html/testFinalModel.html (332 bytes security) (deflated 49%) adding: html/testGenotype.html (332 bytes security) (deflated 48%) adding: html/TFDataset.html (332 bytes security) (deflated 54%) adding: html/transformation.html (332 bytes security) (deflated 46%) adding: html/transformationJSON.html (332 bytes security) (deflated 48%) adding: html/transformationText.html (332 bytes security) (deflated 48%) adding: html/vectorOutput.html (332 bytes security) (deflated 57%) adding: html/vectorOutputMatrices.html (332 bytes security) (deflated 52%) adding: html/weightIn.html (332 bytes security) (deflated 45%) adding: INDEX (332 bytes security) (deflated 79%) adding: LICENSE (332 bytes security) (deflated 63%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 59%) adding: NEWS.Rd (332 bytes security) (deflated 47%) adding: R/ (372 bytes security) (stored 0%) adding: R/PhenStat (332 bytes security) (deflated 41%) adding: R/PhenStat.rdb (332 bytes security) (deflated 20%) adding: R/PhenStat.rdx (332 bytes security) (stored 0%) adding: report/ (372 bytes security) (stored 0%) adding: report/GeCoSy.Rdata (332 bytes security) (deflated 8%) adding: report/maina.bib (332 bytes security) (deflated 64%) adding: report/report.Rnw (332 bytes security) (deflated 78%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/unitTests.R (332 bytes security) (deflated 80%)