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INSTALL report for OrganismDbi on tokay1

This page was generated on 2018-04-12 13:22:04 -0400 (Thu, 12 Apr 2018).

Package 985/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OrganismDbi 1.20.0
Biocore Data Team
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/OrganismDbi
Branch: RELEASE_3_6
Last Commit: d42e06a
Last Changed Date: 2017-10-30 12:39:50 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: OrganismDbi
Version: 1.20.0
Command: rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/OrganismDbi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=OrganismDbi.buildbin-libdir --merge-multiarch OrganismDbi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.20.0.zip && rm OrganismDbi_1.20.0.tar.gz OrganismDbi_1.20.0.zip
StartedAt: 2018-04-11 18:49:15 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:50:05 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 50.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/OrganismDbi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=OrganismDbi.buildbin-libdir --merge-multiarch OrganismDbi_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.20.0.zip  && rm OrganismDbi_1.20.0.tar.gz OrganismDbi_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 58552  100 58552    0     0   685k      0 --:--:-- --:--:-- --:--:--  714k

install for i386

* installing *source* package 'OrganismDbi' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'OrganismDbi'
    finding HTML links ... done
    OrganismDb                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/OrganismDb.Rd:191: missing file link 'seqlevels'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/OrganismDb.Rd:192: missing file link 'seqlengths'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/OrganismDb.Rd:193: missing file link 'isCircular'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/OrganismDb.Rd:194: missing file link 'genome'
    coordinate-mapping-method               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/coordinate-mapping-method.Rd:11: missing file link 'mapToAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/coordinate-mapping-method.Rd:101: missing file link 'mapToTranscripts'
    makeOrganismDbFromBiomart               html  
    finding level-2 HTML links ... done

    makeOrganismDbFromTxDb                  html  
    makeOrganismDbFromUCSC                  html  
    makeOrganismPackage                     html  
    rangeBasedAccessors                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:93: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:120: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:123: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:125: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:195: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:196: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:197: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:201: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:203: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:206: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:209: missing file link 'RangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:215: missing file link 'RangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:225: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQZiDAc/R.INSTALL139c6ba11137/OrganismDbi/man/rangeBasedAccessors.Rd:253: missing file link 'MultiDb-class'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.20.0.zip
* DONE (OrganismDbi)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'OrganismDbi' successfully unpacked and MD5 sums checked
In R CMD INSTALL