Package: M3Drop

Version: 1.4.0

Command: rm -rf M3Drop.buildbin-libdir M3Drop.Rcheck && mkdir M3Drop.buildbin-libdir M3Drop.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=M3Drop.buildbin-libdir M3Drop_1.4.0.tar.gz >M3Drop.Rcheck\00install.out 2>&1 && cp M3Drop.Rcheck\00install.out M3Drop-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=M3Drop.buildbin-libdir --install="check:M3Drop-install.out" --force-multiarch --no-vignettes --timings M3Drop_1.4.0.tar.gz

StartedAt: 2018-04-12 01:05:21 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:09:41 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 260.0 seconds

RetCode: 0

Status:  OK

CheckDir: M3Drop.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf M3Drop.buildbin-libdir M3Drop.Rcheck && mkdir M3Drop.buildbin-libdir M3Drop.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=M3Drop.buildbin-libdir M3Drop_1.4.0.tar.gz >M3Drop.Rcheck\00install.out 2>&1 && cp M3Drop.Rcheck\00install.out M3Drop-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=M3Drop.buildbin-libdir --install="check:M3Drop-install.out" --force-multiarch --no-vignettes --timings M3Drop_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/M3Drop.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'M3Drop/DESCRIPTION' ... OK
* this is package 'M3Drop' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'M3Drop' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'numDeriv'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg__filter_cells: no visible binding for global variable 'x'
bg__get_extreme_residuals: no visible binding for global variable 'x'
Undefined global functions or variables:
  x
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
M3D_getmarkers   59.93   0.00   59.93
M3D_Get_Extremes 11.25   0.36   11.61
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
M3D_getmarkers              100.76   0.02  100.78
M3D_Get_Extremes             14.40   0.41   14.82
M3D_Differential_Expression   6.82   0.19    7.01
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/M3Drop.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'M3Drop' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'M3Drop'
    finding HTML links ... done
    Brennecke_getVariableGenes              html  
    Fitting_Dropout_Models                  html  
    M3D_Clean_Data                          html  
    M3D_Differential_Expression             html  
    M3D_Dropout_Models                      html  
    M3D_Expression_Heatmap                  html  
    M3D_Get_Extremes                        html  
    M3D_Get_Heatmap_Cell_Clusters           html  
    M3D_Test_Shift                          html  
    M3D_ThreeSet_Venn                       html  
    M3D_getmarkers                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'M3Drop' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'M3Drop' as M3Drop_1.4.0.zip
* DONE (M3Drop)
In R CMD INSTALL
In R CMD INSTALL