Package: supraHex

Version: 1.16.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz

StartedAt: 2018-04-12 03:13:14 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:13:58 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 43.9 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/supraHex.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.296	0.000	0.298
sCompReorder	1.060	0.000	1.062
sDistance	0.060	0.004	0.065
sDmat	0.084	0.000	0.084
sDmatCluster	0.176	0.004	0.178
sDmatMinima	0.100	0.004	0.103
sHexDist	0.004	0.000	0.004
sHexGrid	0.004	0.000	0.002
sHexGridVariant	0.004	0.000	0.004
sHexPolygon	0.000	0.000	0.002
sInitial	0.000	0.000	0.002
sMapOverlay	0.332	0.000	0.331
sNeighAny	0.000	0.004	0.005
sNeighDirect	0.000	0.000	0.003
sPipeline	1.208	0.004	1.214
sTopology	0.012	0.004	0.014
sTrainBatch	0.032	0.000	0.030
sTrainSeq	0.252	0.000	0.253
sTrainology	0.000	0.004	0.003
sWriteData	0.224	0.000	0.222
visColoralpha	0.004	0.000	0.005
visColorbar	0.036	0.000	0.035
visColormap	0.008	0.000	0.007
visCompReorder	1.088	0.000	1.090
visDmatCluster	0.212	0.008	0.217
visDmatHeatmap	0.144	0.000	0.144
visHeatmap	0.076	0.000	0.076
visHeatmapAdv	0.836	0.000	0.833
visHexAnimate	0.000	0.000	0.002
visHexBarplot	0.556	0.008	0.565
visHexComp	0.076	0.008	0.086
visHexGrid	0.080	0.000	0.078
visHexMapping	1.092	0.008	1.100
visHexMulComp	0.716	0.008	0.724
visHexPattern	1.508	0.020	1.528
visKernels	0.008	0.000	0.009
visTreeBSclust	0.744	0.004	0.746
visTreeBootstrap	0.644	0.000	0.645
visVp	0.02	0.00	0.02