Package: sscu

Version: 2.8.0

Command: rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_2.8.0.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_2.8.0.tar.gz

StartedAt: 2018-04-12 03:24:16 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:26:51 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 155.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: sscu.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_2.8.0.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_2.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/sscu.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sscu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sscu' version '2.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sscu' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  'sscu.Rmd'
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
op_corre_NCprime 10.47   0.03   10.50
op_corre_CodonW   9.03   0.03    9.06
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
op_corre_NCprime 14.09   0.02   14.11
op_corre_CodonW  11.77   0.01   11.79
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/sscu.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'sscu' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'sscu'
    finding HTML links ... done
    akashi_test                             html  
    genomic_gc3                             html  
    finding level-2 HTML links ... done

    low_frequency_op                        html  
    op_corre_CodonW                         html  
    op_corre_NCprime                        html  
    op_highly                               html  
    op_highly_stats                         html  
    s_index                                 html  
    sscu-package                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sscu' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sscu' as sscu_2.8.0.zip
* DONE (sscu)
In R CMD INSTALL
In R CMD INSTALL