Package: maSigPro

Version: 1.50.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings maSigPro_1.50.0.tar.gz

StartedAt: 2018-04-12 00:46:44 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:49:24 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 160.7 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings maSigPro_1.50.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/maSigPro.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.50.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
tableDS       13.500  0.016  13.572
IsoModel      12.672  0.016  12.791
PodiumChange  12.636  0.012  12.668
getDS         12.568  0.028  12.650
ISOdesign     12.516  0.016  12.540
ISOdata       12.468  0.012  12.490
IsoPlot       12.396  0.012  12.429
seeDS         12.336  0.016  12.393
getDSPatterns 12.216  0.020  12.288
T.fit          5.996  0.012   6.012
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘maSigPro’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maSigPro)

name	user	system	elapsed
ISOdata	12.468	0.012	12.490
ISOdesign	12.516	0.016	12.540
IsoModel	12.672	0.016	12.791
IsoPlot	12.396	0.012	12.429
NBdata	0.000	0.000	0.002
NBdesign	0.000	0.004	0.002
PlotGroups	0.028	0.000	0.032
PlotProfiles	0.024	0.000	0.030
PodiumChange	12.636	0.012	12.668
T.fit	5.996	0.012	6.012
average.rows	0.004	0.000	0.003
data.abiotic	0.004	0.000	0.004
edesign.abiotic	0.004	0.000	0.016
edesignCT	0.000	0.000	0.001
edesignDR	0.000	0.000	0.001
get.siggenes	2.620	0.000	2.621
getDS	12.568	0.028	12.650
getDSPatterns	12.216	0.020	12.288
i.rank	0.000	0.004	0.000
maSigPro	3.704	0.012	3.721
maSigProUsersGuide	0.004	0.004	0.010
make.design.matrix	0.000	0.008	0.010
p.vector	1.848	0.004	1.855
position	0	0	0
reg.coeffs	0	0	0
see.genes	1.128	0.028	1.326
seeDS	12.336	0.016	12.393
stepback	0.036	0.004	0.040
stepfor	0.156	0.000	0.154
suma2Venn	0.128	0.008	0.147
tableDS	13.500	0.016	13.572
two.ways.stepback	0.072	0.000	0.073
two.ways.stepfor	0.108	0.000	0.106