Package: flowFit

Version: 1.16.0

Command: rm -rf flowFit.buildbin-libdir flowFit.Rcheck && mkdir flowFit.buildbin-libdir flowFit.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.16.0.tar.gz >flowFit.Rcheck\00install.out 2>&1 && cp flowFit.Rcheck\00install.out flowFit-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.16.0.tar.gz

StartedAt: 2018-04-12 00:00:36 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:02:41 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 124.9 seconds

RetCode: 0

Status:  OK

CheckDir: flowFit.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf flowFit.buildbin-libdir flowFit.Rcheck && mkdir flowFit.buildbin-libdir flowFit.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.16.0.tar.gz >flowFit.Rcheck\00install.out 2>&1 && cp flowFit.Rcheck\00install.out flowFit-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/flowFit.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowFit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowFit' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowFit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
BugReports field is not a suitable URL but contains an email address
  which will be used as from R 3.4.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.generationsPercent: no visible global function definition for
  'integrate'
parentFitting: no visible global function definition for 'sd'
parentFitting: no visible global function definition for 'hist'
proliferationFitting: no visible global function definition for 'hist'
proliferationGrid: no visible global function definition for 'rgb'
proliferationGrid: no visible global function definition for 'dev.cur'
proliferationGrid: no visible global function definition for 'abline'
plot,parentFittingData-ANY: no visible global function definition for
  'par'
plot,parentFittingData-ANY: no visible global function definition for
  'layout'
plot,parentFittingData-ANY: no visible global function definition for
  'lines'
plot,parentFittingData-ANY: no visible global function definition for
  'axis'
plot,parentFittingData-ANY: no visible global function definition for
  'plot.new'
plot,parentFittingData-ANY: no visible binding for global variable
  'black'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'dev.interactive'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'par'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'rainbow'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'layout'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'lines'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'axis'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'plot.new'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'polygon'
plot,proliferationFittingData-ANY: no visible global function
  definition for 'text'
plot,proliferationFittingData-ANY: no visible binding for global
  variable 'black'
summary,parentFittingData: no visible global function definition for
  'df.residual'
summary,proliferationFittingData: no visible global function definition
  for 'df.residual'
Undefined global functions or variables:
  abline axis black dev.cur dev.interactive df.residual hist integrate
  layout lines par plot.new polygon rainbow rgb sd text
Consider adding
  importFrom("grDevices", "dev.cur", "dev.interactive", "rainbow", "rgb")
  importFrom("graphics", "abline", "axis", "hist", "layout", "lines",
             "par", "plot.new", "polygon", "text")
  importFrom("stats", "df.residual", "integrate", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      11.01   0.08   11.29
proliferationFitting  9.22   0.03    9.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      10.44   0.05   10.58
proliferationFitting  8.78   0.02    8.80
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/flowFit.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'flowFit' ...
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'flowFit'
    finding HTML links ... done
    flowFit-package                         html  
    finding level-2 HTML links ... done

    generationsDistance                     html  
    getGenerations                          html  
    logTicks                                html  
    parentFitting                           html  
    parentFittingData-class                 html  
    plot-methods                            html  
    proliferationFitting                    html  
    proliferationFittingData-class          html  
    proliferationGrid                       html  
    proliferationIndex                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowFit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFit' as flowFit_1.16.0.zip
* DONE (flowFit)
In R CMD INSTALL
In R CMD INSTALL