Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD report for ToPASeq on malbec1

This page was generated on 2018-04-12 13:12:57 -0400 (Thu, 12 Apr 2018).

Package 1407/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ToPASeq 1.12.0
Ivana Ihnatova
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/ToPASeq
Branch: RELEASE_3_6
Last Commit: 79a525e
Last Changed Date: 2017-10-30 12:40:44 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...
veracruz1 OS X 10.11.6 El Capitan / x86_64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

Summary

Package: ToPASeq
Version: 1.12.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
StartedAt: 2018-04-11 19:44:48 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 19:45:44 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 56.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
###
##############################################################################
##############################################################################


* checking for file ‘ToPASeq/DESCRIPTION’ ... OK
* preparing ‘ToPASeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: graphite
Loading required package: gRbase
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: Rgraphviz
Loading required package: grid
Error: processing vignette 'ToPASeq.Rnw' failed with diagnostics:
unused argument (stringsAsFactors = FALSE)
Execution halted