Alvaro Cuadros-Inostroza
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/TargetSearch |
| Branch: RELEASE_3_6 |
| Last Commit: 94fa3c1 |
| Last Changed Date: 2017-10-30 12:39:26 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:19:41 -0400 (Thu, 12 Apr 2018).
| Package 1384/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TargetSearch 1.34.0 Alvaro Cuadros-Inostroza
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TargetSearch |
| Version: 1.34.0 |
| Command: rm -rf TargetSearch.buildbin-libdir && mkdir TargetSearch.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TargetSearch.buildbin-libdir --merge-multiarch TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TargetSearch_1.34.0.zip && rm TargetSearch_1.34.0.tar.gz TargetSearch_1.34.0.zip |
| StartedAt: 2018-04-11 18:11:30 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:15:05 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 214.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf TargetSearch.buildbin-libdir && mkdir TargetSearch.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TargetSearch.buildbin-libdir --merge-multiarch TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TargetSearch_1.34.0.zip && rm TargetSearch_1.34.0.tar.gz TargetSearch_1.34.0.zip
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install for i386
* installing *source* package 'TargetSearch' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c file.c -o file.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c find_peaks.c -o find_peaks.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c getLine.c -o getLine.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c hpf.c -o hpf.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c ncdf.c -o ncdf.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c netcdf_peak_finding.c -o netcdf_peak_finding.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c peakExtraction.c -o peakExtraction.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c ppc.c -o ppc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o file.o find_peaks.o getLine.o hpf.o ncdf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/TargetSearch.buildbin-libdir/TargetSearch/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'TargetSearch'
finding HTML links ... done
FAMEoutliers html
FindPeaks html
ImportFameSettings html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpcBzwL9/R.INSTALL13b017f111c3/TargetSearch/man/ImportFameSettings.Rd:13: missing file link 'read.delim'
ImportLibrary html
ImportSamples html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpcBzwL9/R.INSTALL13b017f111c3/TargetSearch/man/ImportSamples.Rd:26: missing file link 'read.delim'
NetCDFPeakFinding html
Profile html
ProfileCleanUp html
RIcorrect html
TargetSearch-package html
TargetSearchGUI html
Write.Results html
baseline html
defunct html
file html
fixRI html
medianRILib html
peakCDFextraction html
peakFind html
plotFAME html
plotPeak html
plotPeakSimple html
plotRIdev html
plotSpectra html
quantMatrix html
ri2rt html
riMatrix html
rt2ri html
sampleRI html
tsLib-class html
tsMSdata-class html
tsProfile-class html
tsRim-class html
tsSample-class html
writeLibText html
writeMSP html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'TargetSearch' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c file.c -o file.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c find_peaks.c -o find_peaks.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c getLine.c -o getLine.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c hpf.c -o hpf.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c ncdf.c -o ncdf.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c netcdf_peak_finding.c -o netcdf_peak_finding.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c peakExtraction.c -o peakExtraction.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c ppc.c -o ppc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o file.o find_peaks.o getLine.o hpf.o ncdf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/TargetSearch.buildbin-libdir/TargetSearch/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TargetSearch' as TargetSearch_1.34.0.zip
* DONE (TargetSearch)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'TargetSearch' successfully unpacked and MD5 sums checked
In R CMD INSTALL