Habil Zare
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/SamSPECTRAL |
| Branch: RELEASE_3_6 |
| Last Commit: 8a8925b |
| Last Changed Date: 2017-10-30 12:39:28 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:04 -0400 (Thu, 12 Apr 2018).
| Package 1244/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SamSPECTRAL 1.32.0 Habil Zare
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: SamSPECTRAL |
| Version: 1.32.0 |
| Command: rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SamSPECTRAL_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SamSPECTRAL.buildbin-libdir --merge-multiarch SamSPECTRAL_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SamSPECTRAL_1.32.0.zip && rm SamSPECTRAL_1.32.0.tar.gz SamSPECTRAL_1.32.0.zip |
| StartedAt: 2018-04-11 18:11:28 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:12:31 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 62.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SamSPECTRAL_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SamSPECTRAL.buildbin-libdir --merge-multiarch SamSPECTRAL_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SamSPECTRAL_1.32.0.zip && rm SamSPECTRAL_1.32.0.tar.gz SamSPECTRAL_1.32.0.zip
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install for i386
* installing *source* package 'SamSPECTRAL' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable]
int *density, *repres_ind;
^
conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable]
int *density, *repres_ind;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c maximum_of_rows.c -o maximum_of_rows.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'SamSPECTRAL'
finding HTML links ... done
Building_Communities html
Civilized_Spectral_Clustering html
Conductance_Calculation html
Connecting html
SamSPECTRAL-package html
SamSPECTRAL html
check.SamSPECTRAL.input html
eigen.values.10 html
eigen.values.1000 html
kneepointDetection html
small html
stmFSC html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SamSPECTRAL' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable]
int *density, *repres_ind;
^
conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable]
int *density, *repres_ind;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c maximum_of_rows.c -o maximum_of_rows.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SamSPECTRAL' as SamSPECTRAL_1.32.0.zip
* DONE (SamSPECTRAL)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'SamSPECTRAL' successfully unpacked and MD5 sums checked
In R CMD INSTALL